Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2521 ATGGCTGATGAAGAACCAATGCCTACTCGCTGGTCTTTCCAGGACTTCAAATTGTATTATGATTCAAAGTTTGGGAGGAAGAAGGTTGTGCAGAATGGCGAGACTAATGATATAGTTGTCGGTAATGGAAGTTCGTTGAGCATAATATCGAATGGTAATGGGCATTCCAAAAGGTCATCAGATATGGCCATTTACGAGCAGCTTCAGAGCCAGGGGCATAATGGGATCCACACTAATGATGTTTCACCGAACAATATGTATGAAAGGCCGCATAAGTGTTTGCTTCCACCTTTTGAATCTGCAGAAATGCGTACTTTAGCAGAGAGCTTAAGTAGGGATATCATTTGTGGGAGTCTAGATGTGAAGTGGGAAAGCATAAAGGGGCTAGAGAATTACTTTACTGGTTTGTTATCACCATGGAAGGGAATTCTCCTTTTTGGCCCCCTAGGGACGGGAAAGACAATGCTTGCAAAGGCAGTTGCAACAGAGTGCAAGACTACATTTTTTAATATTTCAACATCATCTGTTGTCAGCAAATGGCGAGGAGATTCAGAGAAATTAGTGAAGGTGTTATTTCAGCTTGCCAGGCATCATGCACCCTCAACAATATTTCTTGATGAAATTGATGCAATCATTAGTCAACGTGGTGAAGCACGCAGTGAACATGGAGCAAGTAGACGATTGAAAACTGAGCTACTCATTCAAATGGACGGTTTAACACAGACAGATGAACTTGTTTTTGTTTTGGCTGCAACAAATCTTCCCTGGGAATTGGATGCAGCCATGCTTCGACGTCTTGAGAAGCGAATCCTTGTACCACTTCCTGAACCAGAGGCGAGAATAGCAATGTTTGAGGAACTCCTTCCCCCGCAGCCTGATGAGGAATCAATCCCCTATGATTTGCTGGTCAACCAGACCGAGGGGTATTCTGGCTCGGATATTCGATTACTTTGTAAAGAGGTAGCAATGCAGCCTTTGAGACAGCTACCAAAAGTTGGGCCAATCAGACCTGAGGATATACTGGCAGCTTTGAGGAACACAAGGCCATCTGCACATCTCCATGCCCACAAATATGACAAGTTTAATGCTGATTATGGTAGTCAAATACTTCAATGA 1116 0.4337 MADEEPMPTRWSFQDFKLYYDSKFGRKKVVQNGETNDIVVGNGSSLSIISNGNGHSKRSSDMAIYEQLQSQGHNGIHTNDVSPNNMYERPHKCLLPPFESAEMRTLAESLSRDIICGSLDVKWESIKGLENYFTGLLSPWKGILLFGPLGTGKTMLAKAVATECKTTFFNISTSSVVSKWRGDSEKLVKVLFQLARHHAPSTIFLDEIDAIISQRGEARSEHGASRRLKTELLIQMDGLTQTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPEARIAMFEELLPPQPDEESIPYDLLVNQTEGYSGSDIRLLCKEVAMQPLRQLPKVGPIRPEDILAALRNTRPSAHLHAHKYDKFNADYGSQILQ* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2521 371 CDD AAA 137 274 - -
Lja4g2521 371 Pfam AAA+ lid domain 300 329 IPR041569 -
Lja4g2521 371 Gene3D - 275 347 - -
Lja4g2521 371 Gene3D - 131 361 IPR027417 -
Lja4g2521 371 Pfam ATPase family associated with various cellular activities (AAA) 143 273 IPR003959 GO:0005524|GO:0016887
Lja4g2521 371 PANTHER KATANIN P60 ATPASE-CONTAINING SUBUNIT A-LIKE 2 ISOFORM X1 10 369 - -
Lja4g2521 371 SMART AAA_5 139 276 IPR003593 -
Lja4g2521 371 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 126 351 IPR027417 -
Lja4g2521 371 PANTHER AAA DOMAIN-CONTAINING 10 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2521 Lja-Chr4 31343053 31344266 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2521 98 350 Calmodulin-binding Proteins AT3G56690 34.799 9.93e-39 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2521 K07767 - gmx:100794098 585.489