Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2516 ATGTCATCATCCAACTCTTCTACCACACTATCACTGGACCACCAACTCCCTCCTTCCGAGCAACTTTGTTATGTCCATTGCAACATATGTGACACCATCCTAGCTGTGAGTGTTCCTAGCACTAGCTTGTTCAAGACTGTGACTGTGAGATGTGGTCATTGCACTAACCTCCTTCCGGTGAACATGAGGGCATTGCTGCTGCCATCACCCAATCAATTTCATTTGGGTCACTCTTTCTTCTCCCCACCCCATAACCTTCTGGGGGAGATGCCAAACCCGTCTCCAAATTTTCTTATGAACCACACAAATGCAACAAGTAACTTCTCTCAGTTCTCTGTGCCTGCTAGATCTGCAGCTGATGAGCTTCCCAGGCCACCGATCATAAATAGACCAGCTCCAGAGAAGAGACAGAGAGTTCCCTCAGCATACAACCGCTTCATTAAGGACGAGATCCAACGCATCAAGTCTGTCAATCCTGATATTACTCACAGGGAAGCCTTCAGTGCAGCTGCTAAAAATTGGGCCCACTTCCCGCACATCCACTTTGGTCTCATGCCTGATCAGACTATGAAGAAGACAACTGTGTGCCAGCAGGAAGGAGAGGAGGTTCTCATGATGAAAGATGGGTTTTATGCTTCAGCTAATGTTGGTGTTTCACCCTACTAA 666 0.473 MSSSNSSTTLSLDHQLPPSEQLCYVHCNICDTILAVSVPSTSLFKTVTVRCGHCTNLLPVNMRALLLPSPNQFHLGHSFFSPPHNLLGEMPNPSPNFLMNHTNATSNFSQFSVPARSAADELPRPPIINRPAPEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTMKKTTVCQQEGEEVLMMKDGFYASANVGVSPY* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2516 221 Gene3D High mobility group box domain 128 181 IPR036910 -
Lja4g2516 221 PANTHER PROTEIN YABBY 6-RELATED 1 219 IPR006780 GO:0007275
Lja4g2516 221 PANTHER AXIAL REGULATOR YABBY 3 1 219 - -
Lja4g2516 221 SUPERFAMILY HMG-box 130 177 IPR036910 -
Lja4g2516 221 Pfam YABBY protein 18 184 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2516 Lja-Chr4 31140905 31144763 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2516 29 219 C2C2-YABBY Transcription Factor Family AT4G00180 57.416 2.27e-63 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Lja4g2516 YABBY 2.7e-68 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2516 K25796 - gmx:100798441 388.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2516 4 31140905 31144763 Lja4g2516 4 31140905 31144763 ECH