Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2515 ATGAACACATTTTCACATGTACCTCCAGGCTTTCGGTTTCATCCGACGGATGAAGAACTTGTTGATTACTACCTTAGGAAGAAAATTGCATCTAAAAGGATTGATTTAGATGTCATCAAAGATGTTGATCTCTATAAAATAGAACCATGGGATCTTCAAGAACTATGCAAAATAGGCACGGATGATCAAAGTGACTGGTATTTCTTTAGCCATAAAGATAAGAAGTACCCAACTGGAACTCGCACAAATAGAGCCACAAAAGCAGGATTCTGGAAAGCTACAGGAAGAGATAAGGCAATATACTTGAAGCATTGCTTGATTGGAATGAGAAAAACTCTTGTTTTTTACAAAGGACGAGCCCCAAATGGACAGAAGTCAGATTGGATCATGCATGAGTACCGGCTAGAAACTAATGAAAATGGATCAACTCTTCATCAGGAAGAAGGGTGGGTGGTGTGCAGGGTGTTCAAGAAGAGAATGACAACATCACAGAAAATGGGGGAGTACGAGTCACACTGTTGGTATGAAGACCAAGTTTCCTTTATGCAAGATCTTGAATCACCAAGGCCAATTCCTCATCACCCTTATGCAACATACCCTAATTGCAAGGCAGAGCTGGATCAATTGCAATACAATATGGCCCAAGATCATTTCCTCCAGCTTCCCCAGTTAGAAAGCCCCAAAGTTACTCAATCACCCCCCACTTCACTTGTCCATTATGTCTATGCAAGCAATGGAAGCACCTTGCAGTTGTCATCACTCACTCAAGAAGAAATACACGTGCAGAATCTCCACCACCAAACTCTGCATTCCCTAGACCAAGTGACAGATTGGAGAGTACTTGATAAATTTGTTGCTTCTCAGCTGAGTCATGACCAAGATCATGGTTCCAAGGAAACTAGTTATTCCCAAGAACATACTTCAACATCCACCTCCAGTGGCCAGATTAATCTGTGGAAGTGA 963 0.4174 MNTFSHVPPGFRFHPTDEELVDYYLRKKIASKRIDLDVIKDVDLYKIEPWDLQELCKIGTDDQSDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYLKHCLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNENGSTLHQEEGWVVCRVFKKRMTTSQKMGEYESHCWYEDQVSFMQDLESPRPIPHHPYATYPNCKAELDQLQYNMAQDHFLQLPQLESPKVTQSPPTSLVHYVYASNGSTLQLSSLTQEEIHVQNLHHQTLHSLDQVTDWRVLDKFVASQLSHDQDHGSKETSYSQEHTSTSTSSGQINLWK* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2515 320 MobiDBLite consensus disorder prediction 289 320 - -
Lja4g2515 320 MobiDBLite consensus disorder prediction 302 320 - -
Lja4g2515 320 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Lja4g2515 320 PANTHER NAC DOMAIN-CONTAINING PROTEIN 7-LIKE 4 310 - -
Lja4g2515 320 ProSiteProfiles NAC domain profile. 7 158 IPR003441 GO:0003677|GO:0006355
Lja4g2515 320 Gene3D NAC domain 16 162 IPR036093 GO:0003677|GO:0006355
Lja4g2515 320 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 310 - -
Lja4g2515 320 SUPERFAMILY NAC domain 5 158 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2515 Lja-Chr4 31072483 31075878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2515 1 320 NAC Transcription Factor Family AT1G12260 55.899 5.63e-130 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja4g2515 NAM 2.4e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2515 - - gmx:100797916 494.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2515 4 31072483 31075878 Lja4g2515 4 31072483 31075878 ECH
Lja2g0080 2 612602 613854 Lja4g2515 4 31072483 31075878 PCT