Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2513 ATGAAAGTTGGGGATGGTTTTAGTGACAGTGTTGTTCAGGGCCCTCTGATCAATGAAGCTGCTGTCAAAAAGGTTGAGTCCTTAATTCATGATGCTACATCAAAGGGGGCAAAAGTAATTATTGGCGAGGAAGCATTTGGACCTGTTGCACCCCTTTTGAGGTTCAAAACTGAAGAGGATCCTATCAGAATTGTCAACGACACTAACGCAGGAAACAAACCCATTGAATTATGCATTGAAGAAATTAACATGGGAAAACCATCTGCAGCAGCCAGCAAGATAATATAG 288 0.4167 MKVGDGFSDSVVQGPLINEAAVKKVESLIHDATSKGAKVIIGEEAFGPVAPLLRFKTEEDPIRIVNDTNAGNKPIELCIEEINMGKPSAAASKII* 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2513 95 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 41 71 - -
Lja4g2513 95 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 1 42 - -
Lja4g2513 95 Pfam Aldehyde dehydrogenase family 1 43 IPR015590 GO:0016491
Lja4g2513 95 SUPERFAMILY ALDH-like 1 71 IPR016161 GO:0016491
Lja4g2513 95 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 1 42 - -
Lja4g2513 95 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 43 78 IPR016163 GO:0016620
Lja4g2513 95 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 1 42 IPR016163 GO:0016620
Lja4g2513 95 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 41 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2513 Lja-Chr4 31053551 31054285 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2513 1 71 Aldehyde Dehydrogenase Gene Family AT1G79440 53.061 4.89e-26 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2513 K17761 - gmx:100808318 116.701