Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2507 ATGACTTCTTCGCCTAATGAAAGTGTGCCTTCCAATGAGAAGAATTTGAGTAGAGATTTTAAGCGTGGAATGGCTTGTGCAAAGAAGGTCATGAGCGCAAAAGAAAAAGAAGAAAAATTGGAGTCTGCTTTTGTTGTTGCTGAAAATCGAAAGAAATTTGTCCTTCAAAAAGCCGGTACTATATGCAGAAATTTCAGGTCATCATTAGGAGACTATATGACAGATCCTTATGGTAATATTGTTGCGCATCCTCCGGCAACGTATTCACGCGTCATAACTGAAAGTGCATGGATGGGATTTGTTAAGCATCGTCAAACCGATGAATTCAAGAAAATTAGTGCATCAAATAGAGAAAGAGCATTGAATCCCGAATTTCCATACAGAAGATCACACATTGGAGCTGCAATTGTTGAACAAAATTTGATAGCAGAATCAGGATCAAATGAGACATATTTGCCTCGTTCTTGTATATGGAAGGCTTGCCGAGTGGACGCAAGAGGTGTGATTGATAATGAAAAGGTTCAGCATATTTGGGAACAATGTGAAACATTAGCACAATCACAATCAGAGGCAGATGATCAAGGTCATGATGACATTCTTGCTAAAGCAATGAAAGTGCCAGAGCACCCTGGTCGTGTTAGGGGTATTGGATCTGGAGTCTCTCAAAGGAAATACTTCAAAGGTAAAAAACAGTCAAAGAAGGAAGACAATAAGTTTAATCAATTACAAAGAAAGTTTGATGCTTTAGAGAAGAAGTTGGAGCTGTTAATGCATGCTCAAGGACAGATGAGTGAGGACCAAGAGCTTGAAAACTTAGCATACACCAGTGGTAGGGATAGTTGCACTCCGCTTGAAGTAAACATGACCAATATACCTGCGACATTCACGACACACTGCATTCATCACCTTGCTCCCCACCAAGCACCATCTCGTTCAGACTATGCATGTAAGGTCACCATTAGAGGAAGAGTTCTACTTCTGCTTTCTCTGCTGGTTCTGAGCCTTGTCCTTTTCACTGCTGAATCCGCAGTTGCAAGAGGACCAAACCCGAACCCAATAGAGTTCATAAAGTTCTCGTGCAGAGCCACACGCTACCCTGCTGTGTGCGTCCAAACTCTCACTCGATACGCGCACGTGATTCGCCAGAACGAGCAGCAACTAGCCATCACTGCCTTGACAGTGAGCATGTCCATGACCAAGTCAAGTGCATCATTCATGAAGAAGATGACAAAGGTGAAGGGAATCAAGCCAAGGGAACACGGTGCTGTGCAAGATTGCAAGGAGAACATGGACAACAGTGTGGATCGTCTTAACCAATCGGTGAAGGAGATGGGGCTTACCGCAGCCGGTAACGTGATGTGGCGAATGAGCAATGTGCAAACTTGGGTTAGTGCTGCTCTCACTGATCAGAACACTTGTCTTGATGGGTTTGCTCATCCTCAAATGGATAGAAACTTGAAGGCTTCTATAAGGGCCAGGGTTGTTGATGCTTCTCAAGTCACTAGTAATGCCCTTGCTTTGGTTAATCGCTTTGCCTCAAAGATTGAGACACCATAA 1557 0.4342 MTSSPNESVPSNEKNLSRDFKRGMACAKKVMSAKEKEEKLESAFVVAENRKKFVLQKAGTICRNFRSSLGDYMTDPYGNIVAHPPATYSRVITESAWMGFVKHRQTDEFKKISASNRERALNPEFPYRRSHIGAAIVEQNLIAESGSNETYLPRSCIWKACRVDARGVIDNEKVQHIWEQCETLAQSQSEADDQGHDDILAKAMKVPEHPGRVRGIGSGVSQRKYFKGKKQSKKEDNKFNQLQRKFDALEKKLELLMHAQGQMSEDQELENLAYTSGRDSCTPLEVNMTNIPATFTTHCIHHLAPHQAPSRSDYACKVTIRGRVLLLLSLLVLSLVLFTAESAVARGPNPNPIEFIKFSCRATRYPAVCVQTLTRYAHVIRQNEQQLAITALTVSMSMTKSSASFMKKMTKVKGIKPREHGAVQDCKENMDNSVDRLNQSVKEMGLTAAGNVMWRMSNVQTWVSAALTDQNTCLDGFAHPQMDRNLKASIRARVVDASQVTSNALALVNRFASKIETP* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2507 518 CDD PMEI-like_3 359 513 - -
Lja4g2507 518 PANTHER PECTINESTERASE INHIBITOR-LIKE 331 514 - -
Lja4g2507 518 MobiDBLite consensus disorder prediction 1 20 - -
Lja4g2507 518 PANTHER PECTINESTERASE INHIBITOR 9 331 514 - -
Lja4g2507 518 TIGRFAM PME_inhib: pectinesterase inhibitor domain 326 509 IPR006501 GO:0004857
Lja4g2507 518 SMART PMEI_2 351 507 IPR006501 GO:0004857
Lja4g2507 518 Gene3D Invertase/pectin methylesterase inhibitor family protein 353 511 IPR035513 -
Lja4g2507 518 Coils Coil 232 259 - -
Lja4g2507 518 Pfam Plant invertase/pectin methylesterase inhibitor 355 507 IPR006501 GO:0004857
Lja4g2507 518 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 354 511 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2507 Lja-Chr4 30945829 30959984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2507 346 508 Carbohydrate Esterase AT3G14310 27.273 1.06e-19 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2507 - - lja:Lj2g3v0621470.1 447.203