Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2506 ATGATAATAAATACTACCACTTCTGATCCCGAAGTTTCTGCTCTTGAAAAAAAAATACGGGACATGCCCAATATTTACATTGCTCTAATAGTTAAAGGTCGAGATACTGTTGGTCAACAAATTAACGTGACTTGTGAAGTACAGCAATTATTAGGAAATAATCGCGTTAGAGCTGTAGCTATGAGAGCTACGGATGGTCTAACGAGAGGAATGGAAGTTATTGACACAGGAGCTGCTCTAAGTGTTCCGGTGGGTGGAGTAACTCTAGGACGAATTTTCAACGTACTTGGCGAGCCTATTGATAATTTGGGTCTCGTAGATACTCGTACAACATCTCCTATTCACAGATTCGCGCCTGCCTTTATACAGTTAGATACAAAATTATCCATTTTTGAAACAGGAATTAAAGTAGTAGATCTTTTAGCTCCTTATCGCTGTGGAGGAAAAATAGGACTTTTCGGTGGAGCTGGAGTGGGTAAAACAGTACTCATTATGGAATTAATCAATAACATTGCCAAAGCTCATGGGGGTGTGTCCGTATTTGGCGGAGTAGGTGAGCGTACTCGTGAGGGAAACGAATCAAAAGTAGCTCTAGTCTACGGTCAAATGAATGAACCGCCTGGAGCTCGTATGAGAGTTGGGTTAACTGCCCTAACTATGGCGGAATATTTTCGAGATGTGAATGAACAAGACGTACTTCTATTTATCGACAATATCTTTCGTTTCGTCCAAGCAGGATCCGAAGTATCCGCTTTATTAGGTCGAATGCCTTCCGCTGTGGGTTATCAACCTACCCTTAGTACCGAAATGGGTTCTTTACAAGAAAGAATTACTTCTACCAAAGAAGGGTCCATAACTTCTATTCAAGCAGTTTATGTACCCGCAGATGATTTAACTGATCCCGCCCCCGCCACGACATTTTCACATTTAGATGCTACTACTGTACTATCAAGAGGATTAGCTGCCAAAGGTATCTATCCAGCAGTAGATCCTTTAGATTCAACGTCAACTATGCTCCAACCCCGAATCGTTGGTGAAGAACATTACAAAACTGCGCAAAGAGTTAAACAAACTTTACAACGTTACAAAGAACTTCAGGATATTATAGCTATCCTTGGGTTGGATGAATTATCTGAAGAGGACCGTTTGACCGTAGCAAGAGCACGAAAAATTGAGCGTTTCTTATCACAACCTTTTTTTGTAGCAAAAGTATTTACCGGTTCATCGGGGAAATATGTTGGTCTAGCAGAAACAATTAGAGGGTTTAAATTGATTCTTTCTGGTGAATTAGATAGTCTTCCCGAACAAGCCTTTTATTTGGTGGGTAATATCGATGAAGCTACCTTGAAGGCTACGAATTTAGAAAAGGAGAGAAAATTGAAGAAATGA 1389 0.4039 MIINTTTSDPEVSALEKKIRDMPNIYIALIVKGRDTVGQQINVTCEVQQLLGNNRVRAVAMRATDGLTRGMEVIDTGAALSVPVGGVTLGRIFNVLGEPIDNLGLVDTRTTSPIHRFAPAFIQLDTKLSIFETGIKVVDLLAPYRCGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFSHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYKTAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAKVFTGSSGKYVGLAETIRGFKLILSGELDSLPEQAFYLVGNIDEATLKATNLEKERKLKK* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2506 462 ProSitePatterns ATP synthase alpha and beta subunits signature. 327 336 IPR020003 GO:0005524
Lja4g2506 462 Hamap ATP synthase subunit beta [atpB]. 2 454 IPR005722 GO:0015986|GO:0045261|GO:0046933
Lja4g2506 462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 341 IPR027417 -
Lja4g2506 462 Gene3D - 339 462 IPR024034 -
Lja4g2506 462 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 134 336 IPR000194 GO:0005524
Lja4g2506 462 Pfam ATP synthase alpha/beta family, beta-barrel domain 15 77 IPR004100 GO:0046034|GO:1902600
Lja4g2506 462 CDD ATP-synt_F1_beta_N 22 80 - -
Lja4g2506 462 SMART AAA_5 146 320 IPR003593 -
Lja4g2506 462 PANTHER ATP SYNTHASE 21 458 - -
Lja4g2506 462 TIGRFAM atpD: ATP synthase F1, beta subunit 20 454 IPR005722 GO:0015986|GO:0045261|GO:0046933
Lja4g2506 462 Gene3D - 13 79 - -
Lja4g2506 462 PANTHER F0F1-TYPE ATP SYNTHASE, BETA SUBUNIT 21 458 - -
Lja4g2506 462 CDD ATP-synt_F1_beta_C 343 450 - -
Lja4g2506 462 Gene3D - 80 338 IPR027417 -
Lja4g2506 462 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 339 454 - -
Lja4g2506 462 CDD F1-ATPase_beta 80 341 - -
Lja4g2506 462 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 20 78 IPR036121 GO:0046034|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2506 Lja-Chr4 30846234 30847728 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2506 133 400 Primary Pumps ATPases(2) AT1G78900 30.132 2.67e-25 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2506 K02112 - mnt:24286633 816.224