Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2497 ATGAGTTCTCAGCAGAACGATGGCATGAGCTACTCCTCCACTTCGGAACCAAAACCCTGCGCCAACAACTGCGGCTTCTTCGGCACCGCCGGCAACAGCAACCTCTGCTCCAAGTGCTACCGCGAATCCATCACCCAAGGCGAACGCGCCGCCTCCGCCAAAGCCGCCGTCGAGAAATCCCTTCTCATCCCCGTCACCGCCGCCTCCGCTGATCCGCCTGCTCCTGCGGCGGATCCCTCTCCCTCCGCCTCTGCTGATCCGGCGTCTGGCCTTGACGCGCCGCCGTCGTCGAACCGATGCGGTTGCTGCAAGAAGAAAGTGGGCTTGACCGGGTTTGTGTGCAAGTGTGGGGCCACGTTCTGCGGGACCCACCGGTACCCCGAGAAGCATGAGTGCTCGTTTGATTTCAAGGTTGTGGGGCGTGATGCTATTTCGAAGCATAATCCTGTGGTTAAGGCTGACAAGATTCAAAGGTTTTAG 480 0.5958 MSSQQNDGMSYSSTSEPKPCANNCGFFGTAGNSNLCSKCYRESITQGERAASAKAAVEKSLLIPVTAASADPPAPAADPSPSASADPASGLDAPPSSNRCGCCKKKVGLTGFVCKCGATFCGTHRYPEKHECSFDFKVVGRDAISKHNPVVKADKIQRF* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2497 159 Pfam AN1-like Zinc finger 100 136 IPR000058 GO:0008270
Lja4g2497 159 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 20 61 - -
Lja4g2497 159 SMART A20_3 17 41 IPR002653 GO:0003677|GO:0008270
Lja4g2497 159 MobiDBLite consensus disorder prediction 68 96 - -
Lja4g2497 159 ProSiteProfiles Zinc finger AN1-type profile. 94 140 IPR000058 GO:0008270
Lja4g2497 159 SUPERFAMILY AN1-like Zinc finger 94 154 IPR035896 -
Lja4g2497 159 Gene3D - 2 61 - -
Lja4g2497 159 ProSiteProfiles Zinc finger A20-type profile. 14 48 IPR002653 GO:0003677|GO:0008270
Lja4g2497 159 Gene3D - 75 155 IPR035896 -
Lja4g2497 159 Pfam A20-like zinc finger 19 41 IPR002653 GO:0003677|GO:0008270
Lja4g2497 159 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 159 - -
Lja4g2497 159 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 1 1 159 - -
Lja4g2497 159 SMART AN1_Zf_4 100 137 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2497 Lja-Chr4 30395363 30396399 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2497 18 159 C2H2 Transcription Factor Family AT3G52800 35.669 4.66e-31 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2497 - - adu:107472707 186.422