Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2495 ATGGAAGGTGTTACAGTTAGTGGTGGCGTTACGGTGGTGGGATCAGATGCTCCGTCGGAGTACCATGTAGCTCCGAGAACAGACAACTCAGCTCCGTCAGGTGGATCCGCAGCACATGTTCCAGCGGCAGTCCAGGTGACTACTCCGGCGACGGTCACGGTGTCTCCGGCGGCCATGACGATGCCGGTGAAGAAGAAGAGGGGCAGGCCGAGAAAGTATGCACCGGACGGGTCAGCGACCATGCCGCTGTCTCCGAAGCCGATATCCTCTTCGGCTCCGCTGCCGCCGGTGATTGATTTCTCGGCGGAGAAGCGGGGGAAGGTGGTGCGGCCAGTTAGCTCGGTGAGCAAAGCCAGATTTGAGCTGGAGAACTTAGGTGAATGGGTCGCATGCTCTGTTGGTGGTAATTTTACACCCCATGTCATCACTGTTAATACTGGGGAGGATGTTACTATGAAGGTAATATCATTTTCTCAGCAAGGGCCTCGAGCTATATGCATTCTTTCCGCAAATGGTGTCATATCAAGTGTCACACTTCGTCAACCTGACTCTTCTGGGGGCACATTGACATATGAGGGACGGTTTGAAATTCTGTCTCTATCTGGTTCATTCATGCTGAGTGAAAGTGGAGGAACACGAAGCAGATCCGGTGGCATGAGCGTCTCTTTAGCAGGTCCTGATGGACGCGTTGTAGGCGGGGGAGTAGCTGGCCTGTTGATTGCTGCAAGTCCTGTGCAGGTAGTGGTAGGAAGTTTTCTGGCAGGAAACCAACATGAGCAGAACACAAAAAAACATAAACATGAGGATATATCAACTGTGACAGTTACTTCAGCTGTTCCTGTATCAACTCTTGATCCAGTAACTATTCTACAATCAACAACTTCCTTCCGCGGAGATAATTGGTCTGCTGTGTCAGCTGATCATGCCAATAATAAACCAGCCGACAATAATGTATCACTTCCTGGAGGGTAA 972 0.5093 MEGVTVSGGVTVVGSDAPSEYHVAPRTDNSAPSGGSAAHVPAAVQVTTPATVTVSPAAMTMPVKKKRGRPRKYAPDGSATMPLSPKPISSSAPLPPVIDFSAEKRGKVVRPVSSVSKARFELENLGEWVACSVGGNFTPHVITVNTGEDVTMKVISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMLSESGGTRSRSGGMSVSLAGPDGRVVGGGVAGLLIAASPVQVVVGSFLAGNQHEQNTKKHKHEDISTVTVTSAVPVSTLDPVTILQSTTSFRGDNWSAVSADHANNKPADNNVSLPGG* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2495 323 MobiDBLite consensus disorder prediction 61 90 - -
Lja4g2495 323 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 8 321 IPR039605 GO:0003680
Lja4g2495 323 Pfam Plants and Prokaryotes Conserved (PCC) domain 139 252 IPR005175 -
Lja4g2495 323 Gene3D - 139 276 - -
Lja4g2495 323 SUPERFAMILY AF0104/ALDC/Ptd012-like 136 256 - -
Lja4g2495 323 MobiDBLite consensus disorder prediction 303 323 - -
Lja4g2495 323 ProSiteProfiles PPC domain profile profile. 134 276 IPR005175 -
Lja4g2495 323 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 8 321 - -
Lja4g2495 323 CDD DUF296 138 252 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2495 Lja-Chr4 30347778 30352438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2495 8 320 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 58.580 2.00e-117 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2495 - - gmx:100801730 454.136