Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2479 ATGAAGTCCTTTCATCTTCTCCTTCCTCTGTTTCTATTGCTTGTGCTTCTTAGTCCGCAGCTGGTTGTTGGAAATGCAGAGCTCAGAGCTCTGATGGACTTGAAATCCTCTCTGGACCCAGAAGACAAGCTCCTTGGCTCGTGGACAAGTGATGGTGATCCATGCAGTGGTTCCTTCTTGGGGGTTTCGTGCAACGAGCACCGCAAAGTGGGGAATATATCATTGCCAGGGAGGGGTCTTTCTGGCAAGCTCTCTCCAGCGGTGGCTGAACTCAAATGCTTATCTGGTTTGTATCTGCATTACAACCATCTTTCTGGTGAGATACCAGCAGAGATTTCAAATCTCAATGAATTGGTTGATCTTTATCTCAACTTCAATAATCTATCCGGAACCATTCCTTCACATATGGGGAACATGTCTAGCCTCCAAGTGCTGCAGTTAGGCTATAACCAGCTGGAGGGGAACATACCTGAGCAGATGGGTTCATTGAAGCAGCTTACAGCTCTTGCTTTGCAACATAACAAATTAACTGGTCAAATTCCTCTAAGCTTGGGGAACTTGGAGATGCTAAGGAGGCTAAATTTGAGCTTTAACAATTTCAATGGTATGATCCCGGCGACACTCGGTGATATTGCATACTTGGAAGTTCTAGATGTTCAAAACAATTCTCTTTCAGGGATTGTTCCTTCTGCATTGAAGAAATTGCAGGAAGGGTTCCAAGGTGCAAACAACCCAGGTCTCTGTGGAGTTGGATTTTCTTCTTTGAGAGTATGCAACACAGATAATAAATTTGATGCCAGCCAATTTGATGCCTCAGATGTATACATAAACACAAATCCTCCAAAAAATATCCCAGAGCCTGCAAATACCAAGTTGCATTCTAACCAGACACACTGCTCAAGATCAAGAAAGGTTACTTATACTGTCATTGCAGCAAGTGTTAGTACTATCACTATCACATTCATGGCTATTGGGTTTTTCATATTTCTCAGATATCGCCGCCAAAGACAGAGAATCAGGAATTCATCCGATCCTTCTGAGGGCCAATTTAGTCCTCACCAGCCTAAAGAATCTTACAGTAGAAGTCCATCTCCACTTGTTAATCTTGATTATTATTATAATGGATGGGATTCATTGGCTGATGGTGAACATTTAAAAAGTTTTAGATTCAATGTTGATGAGGTGGAATCAGCAACACAGCACCTTTCTGAGGCCAATTTATTGAGCAAGAGCAAATTCTCAGCAGTCTATAAAGGAGTTCTCAGGGACGGTTCTCATGTGGCTATTAGAAGTATTAGTGAGACATGCTGCAAAACTGAGGAAGCTGAATTTGTGAAGGGGTTGTGCCTATTAACCTCACTGAGACATGAAAACATTGTTAAGATGAGAGGCTTCTGTTGCTCAAAAAGTAGAGGTGAGTGCTTTCTTATCTATGAGTTTGCCACCAGGGGAAATCTGTCTCAATATCTTGACATGGAAGATGGAAGCAACCATGTTCTTGAGTGGTCCAACAGGGTTTCTATCATCAGGGGCATTGCAAATGGAATTGAATATCTGCACAGCAATGAAGCAAGTAAAGCTACAATAGTACACCAAAACATTTCAGTTGAAAAAGTTATGCTTGACCATCAGTTTAAACCATTGATCATGGATGCTGGCCTCCCCAAGCTTCTTGCAGATGATGTTGTGTTCTCAGCTCTGAAAGTAAGTGCTGCCATGGGATATCTAGCTCCTGAATACATCACTACTGGACGCTTTACTGAGAAGAGTGACATATACGCATTTGGGGTCATTGTTCTTCAAGTTCTATCTGGGAAGACAACAATAGGTGGTTCAATCCGGAACGCGGTTGAATCTTTAAGATTTGAAGAATTTGTGGACAAAAATCTAAAGGGAATATATTCTAAATCTGAAGTAGAAATTCTTTCAAAGCTTGCAACAGCGTGCACCCATGAGCTTCCTGATCAAAGGCCAGCCATGAGGGAGGTGATTCAGGAGCTGAGCATGTTAGCAACTCATTCTTCATGA 2028 0.4211 MKSFHLLLPLFLLLVLLSPQLVVGNAELRALMDLKSSLDPEDKLLGSWTSDGDPCSGSFLGVSCNEHRKVGNISLPGRGLSGKLSPAVAELKCLSGLYLHYNHLSGEIPAEISNLNELVDLYLNFNNLSGTIPSHMGNMSSLQVLQLGYNQLEGNIPEQMGSLKQLTALALQHNKLTGQIPLSLGNLEMLRRLNLSFNNFNGMIPATLGDIAYLEVLDVQNNSLSGIVPSALKKLQEGFQGANNPGLCGVGFSSLRVCNTDNKFDASQFDASDVYINTNPPKNIPEPANTKLHSNQTHCSRSRKVTYTVIAASVSTITITFMAIGFFIFLRYRRQRQRIRNSSDPSEGQFSPHQPKESYSRSPSPLVNLDYYYNGWDSLADGEHLKSFRFNVDEVESATQHLSEANLLSKSKFSAVYKGVLRDGSHVAIRSISETCCKTEEAEFVKGLCLLTSLRHENIVKMRGFCCSKSRGECFLIYEFATRGNLSQYLDMEDGSNHVLEWSNRVSIIRGIANGIEYLHSNEASKATIVHQNISVEKVMLDHQFKPLIMDAGLPKLLADDVVFSALKVSAAMGYLAPEYITTGRFTEKSDIYAFGVIVLQVLSGKTTIGGSIRNAVESLRFEEFVDKNLKGIYSKSEVEILSKLATACTHELPDQRPAMREVIQELSMLATHSS* 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2479 675 Gene3D Phosphorylase Kinase; domain 1 378 480 - -
Lja4g2479 675 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 3 672 - -
Lja4g2479 675 PANTHER PROTEIN NSP-INTERACTING KINASE 2-LIKE 3 672 - -
Lja4g2479 675 Pfam Leucine rich repeat 117 176 IPR001611 GO:0005515
Lja4g2479 675 ProSiteProfiles Protein kinase domain profile. 402 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2479 675 Gene3D Ribonuclease Inhibitor 140 251 IPR032675 -
Lja4g2479 675 MobiDBLite consensus disorder prediction 340 362 - -
Lja4g2479 675 SUPERFAMILY L domain-like 27 235 - -
Lja4g2479 675 Gene3D Ribonuclease Inhibitor 26 138 IPR032675 -
Lja4g2479 675 Pfam Protein tyrosine and serine/threonine kinase 406 667 IPR001245 GO:0004672|GO:0006468
Lja4g2479 675 MobiDBLite consensus disorder prediction 342 362 - -
Lja4g2479 675 Pfam Leucine Rich Repeat 214 235 IPR001611 GO:0005515
Lja4g2479 675 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Lja4g2479 675 SMART LRR_typ_2 211 234 IPR003591 -
Lja4g2479 675 SMART LRR_typ_2 91 115 IPR003591 -
Lja4g2479 675 SMART LRR_typ_2 187 210 IPR003591 -
Lja4g2479 675 SMART LRR_typ_2 139 163 IPR003591 -
Lja4g2479 675 Gene3D Transferase(Phosphotransferase) domain 1 482 673 - -
Lja4g2479 675 SUPERFAMILY Protein kinase-like (PK-like) 386 670 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2479 Lja-Chr4 30036319 30040303 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2479 8 515 Miscellaneous Gene Families AT4G22730 56.844 0.0 572
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Lja4g2479 PK_Tyr_Ser-Thr 8.3e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2479 - - gmx:100784155 982.245