Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2469 ATGGGCAGGCAACCTTGCTGTGACAAACTTGGGGTGAAGAAAGGTCCATGGACAGCAGAGGAAGACAAGAAGCTCATCAACTTCATTCTCACCAATGGCCAGTGTTGTTGGCGTGCTGTGCCAAAGCTTGCTGGCCTTAAGCGTTGCGGCAAGAGTTGCAGGCTTCGTTGGACTAATTATCTTCGCCCAGACCTCAAGAGAGGGCTCCTCACAGAAGCTGAGGAGCAGCTTGTGATTGATCTTCATGCCCGTCTTGGCAACAGGTGGTCCAAGATTGCTTCAAAGTTACCAGGAAGAACAGACAATGAGATTAAAAATCACTGGAACACCCACATCAAGAAAAAACTTCTCAAGATGGGGATTGATCCAGTTACACATGAATCTCTCAATAAACAAGCTGAACTCAAGGACAGTTCACTATCCCCTGCCGAGCCATTGCCACCACAACCTCATGAGGTCAAGGAAAGTACTGAAGGGGTTCTCAACAACTCTGAGGATCAGAATTCTAGCTCATCCCCAGATGAAAATTCTTCTGGAGAAGAATCCCTTTTGCTAGATAGCATTTGTAGTGATGACTCACTAATAAATAGCTTGTGGTTGGATGAAACTCCTCTGGTGGAAGCATTGTGGGACTCTGCACCTATAGCACCTGATGACAATACTAAAATTGACATGGGTTTGGTGTCATCTTGGGAGGATAATTGTGCTTGGCTATTTGACTGTGAGGACTTTGGTATTCATGATTTTGGGTTTAACTCTTTCGATGAGGTAGAGTCTTGTCCATTGCAAACTATAGAGATGAAAGAAGAGGAGCATTAG 819 0.4505 MGRQPCCDKLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLKRCGKSCRLRWTNYLRPDLKRGLLTEAEEQLVIDLHARLGNRWSKIASKLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHESLNKQAELKDSSLSPAEPLPPQPHEVKESTEGVLNNSEDQNSSSSPDENSSGEESLLLDSICSDDSLINSLWLDETPLVEALWDSAPIAPDDNTKIDMGLVSSWEDNCAWLFDCEDFGIHDFGFNSFDEVESCPLQTIEMKEEEH* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2469 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lja4g2469 272 CDD SANT 16 61 IPR001005 -
Lja4g2469 272 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lja4g2469 272 PANTHER PROTEIN ODORANT1 2 257 - -
Lja4g2469 272 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 257 - -
Lja4g2469 272 MobiDBLite consensus disorder prediction 132 181 - -
Lja4g2469 272 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Lja4g2469 272 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lja4g2469 272 CDD SANT 71 112 IPR001005 -
Lja4g2469 272 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lja4g2469 272 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja4g2469 272 MobiDBLite consensus disorder prediction 156 181 - -
Lja4g2469 272 Gene3D - 71 140 - -
Lja4g2469 272 Gene3D - 12 67 - -
Lja4g2469 272 SMART sant 13 63 IPR001005 -
Lja4g2469 272 SMART sant 66 114 IPR001005 -
Lja4g2469 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2469 Lja-Chr4 28929705 28931722 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2469 1 251 MYB Transcription Factor Family AT4G22680 58.303 3.28e-99 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja4g2469 Myb_DNA-binding 2.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2469 K09422 - gmx:100786965 431.024