Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2463 ATGGCTCCAATTCACCAATCTTGTAGCTTCTTGTTGATCACATTCATGATCACAATCATAGGGAAGCCTCCACTAGTAGCTGGCATATTTCGACCTAGTCAATGGACTCTTGCACATGCCACATTTTATGGTGACGAGACTGCTTCCGCCACCATGGGAGGAGCATGTGGGTACGGAAATTTGTTCTTGAACGGTTACGGAACAGATACAGCTGCATTGAGCTCGACGTTGTTCAACAATGGGTACGCTTGTGGAACTTGTTACCAAATAAAATGCGTCCAAGCGAGCGCGTGCTATGGCAATGTGCCTTACACCACGGTGACCGCCACCAATCTGTGCCCTCCTAATTGGTCTGAGGCTTCCGATAACGGCGGCTGGTGTAACCCTCCGCGTACGCATTTTGACATGGCCAAGCCTGCCTTCATGAAAATTGCGCAATGGAAGGCCGGCATTGTCCCCGTTATGTACCGCAGGGTCCCGTGCGTGAGGCGCGGAGGGCTTCGATTCTCTTTCCAAGGAAACGGGTATTGGTTGTTGGTGTACTTGATGAACGTGGGAGGTGGAGGTGATGTTTCCAAGATGTGGGTGAAAGGAAGCAGAACAGGGTGGATTAGTATGAGCCATAACTGGGGTGCTTCATACCAAGCATTTGCAACACTGAGAGGCCAAGCTCTTTCTTTCAGAGTTACTTCCTACACCACCAGAGAAACCATAACAGCATGGAATGTTGCTCCTGCTAATTGGGCTGCAGGATTAACTTATTCCACCCCTGTCAACTTCCATTAA 786 0.4949 MAPIHQSCSFLLITFMITIIGKPPLVAGIFRPSQWTLAHATFYGDETASATMGGACGYGNLFLNGYGTDTAALSSTLFNNGYACGTCYQIKCVQASACYGNVPYTTVTATNLCPPNWSEASDNGGWCNPPRTHFDMAKPAFMKIAQWKAGIVPVMYRRVPCVRRGGLRFSFQGNGYWLLVYLMNVGGGGDVSKMWVKGSRTGWISMSHNWGASYQAFATLRGQALSFRVTSYTTRETITAWNVAPANWAAGLTYSTPVNFH* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2463 261 PRINTS Expansin signature 141 154 IPR002963 GO:0009664
Lja4g2463 261 PRINTS Expansin signature 105 115 IPR002963 GO:0009664
Lja4g2463 261 PRINTS Expansin signature 212 233 IPR002963 GO:0009664
Lja4g2463 261 PRINTS Expansin signature 177 198 IPR002963 GO:0009664
Lja4g2463 261 PRINTS Expansin signature 65 79 IPR002963 GO:0009664
Lja4g2463 261 PRINTS Expansin signature 124 141 IPR002963 GO:0009664
Lja4g2463 261 PRINTS Expansin signature 165 177 IPR002963 GO:0009664
Lja4g2463 261 SMART dpbb_1 70 156 IPR007112 -
Lja4g2463 261 PRINTS Expansin/Lol pI family signature 34 49 IPR007118 GO:0005576
Lja4g2463 261 PRINTS Expansin/Lol pI family signature 242 256 IPR007118 GO:0005576
Lja4g2463 261 PRINTS Expansin/Lol pI family signature 74 92 IPR007118 GO:0005576
Lja4g2463 261 PRINTS Expansin/Lol pI family signature 149 165 IPR007118 GO:0005576
Lja4g2463 261 PRINTS Expansin/Lol pI family signature 203 217 IPR007118 GO:0005576
Lja4g2463 261 PRINTS Expansin/Lol pI family signature 52 70 IPR007118 GO:0005576
Lja4g2463 261 SUPERFAMILY PHL pollen allergen 163 255 IPR036749 -
Lja4g2463 261 Pfam Lytic transglycolase 70 156 IPR009009 -
Lja4g2463 261 Gene3D - 27 161 IPR036908 -
Lja4g2463 261 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 176 256 IPR007117 -
Lja4g2463 261 Pfam Expansin C-terminal domain 168 245 IPR007117 -
Lja4g2463 261 Gene3D - 167 261 IPR036749 -
Lja4g2463 261 PANTHER EXPANSIN-A15 2 261 IPR002963 GO:0009664
Lja4g2463 261 SUPERFAMILY Barwin-like endoglucanases 34 184 IPR036908 -
Lja4g2463 261 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 53 166 IPR007112 -
Lja4g2463 261 PANTHER EXPANSIN 2 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2463 Lja-Chr4 28794707 28795969 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2463 1 261 Expansin Gene Family AT1G12560 67.045 2.05e-128 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2463 - - gmx:100781459 485.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2463 4 28794707 28795969 Lja4g2463 4 28794707 28795969 ECH
Lja4g2463 4 28794707 28795969 Lja4g2463 4 28794707 28795969 PCT