Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2460 ATGGTTCGGGGGAAAACTCAGATGAAGCGCATCGAGAATGAAACAAGCAGACAAGTAACGTTCTCCAAGAGAAGAAATGGACTCCTTAAGAAGGCTTTTGAGCTCTCAGTGCTGTGTGATGCTGAAGTCGCACTCATCATCTTCTCTACCACAGGGAAGCTCTATGAGTTCTCCAGTTCAAGTATAAACAAAATAGTTGAACGCTATCAAAGGAAAGTCAATGACTTGGGTCTCAGCACCAAAGAAATCCAAGAAAATACACAGCATCTAAAAGAAGGTGATCACATGAGCATAGCACGGATGATCGAGCAGCTTGAAATTTCCAAAAGGAAGCTTCTAGGAGAAGAGTTGGATACATATGCTATTGACGAGTTAGTACAGATAGAGAACCAGCTCGAATACAGCTTAAGCAAAATTAGGGCAACAAAGAGTCAATTGTTCAAGGAACGAATTGAGAAGCTAAAAGAAGAGGAAAGGTCACTGCTGGAAGAAAATAAACGCCTACAGTGTCGGTTTGAACAACAACGTTCTTCAAATAAGCCAGATGTTGAACTCATCGTGGAAGAGCAAGGTGAGGAGGAGGTGGAGACGGAGTTGTTCATAGGGCGACCCGAGAGGCGAATTCCTTGA 630 0.4317 MVRGKTQMKRIENETSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSTTGKLYEFSSSSINKIVERYQRKVNDLGLSTKEIQENTQHLKEGDHMSIARMIEQLEISKRKLLGEELDTYAIDELVQIENQLEYSLSKIRATKSQLFKERIEKLKEEERSLLEENKRLQCRFEQQRSSNKPDVELIVEEQGEEEVETELFIGRPERRIP* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2460 209 PANTHER MADS BOX PROTEIN 1 205 - -
Lja4g2460 209 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lja4g2460 209 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lja4g2460 209 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lja4g2460 209 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja4g2460 209 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Lja4g2460 209 CDD MADS_MEF2_like 3 70 IPR033896 GO:0000977|GO:0045944
Lja4g2460 209 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lja4g2460 209 PANTHER MADS-BOX PROTEIN SOC1 1 205 - -
Lja4g2460 209 SUPERFAMILY SRF-like 3 73 IPR036879 GO:0003677|GO:0046983
Lja4g2460 209 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lja4g2460 209 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lja4g2460 209 Pfam K-box region 91 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja4g2460 209 Coils Coil 144 171 - -
Lja4g2460 209 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2460 Lja-Chr4 28768762 28776311 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2460 1 207 MADS-box Gene Family AT4G22950 57.477 2.26e-71 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lja4g2460 K-box 6.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2460 - - gmx:100805260 271.166
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2460 4 28768762 28776311 Lja4g2460 4 28768762 28776311 ECH
Lja4g2460 4 28768762 28776311 Lja3g1975 3 22720698 22724189 ECH