Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2457 ATGAGTGGAGTGACGTCGTATCATGAGATGGATCAAGAAGACGATGGATTCAACACGGACCTAAGCACCAGCGGCGGCGACCCACCTGAAACCACCACCAACAGTCATGGAGTCTCCGAACAAGCCTTGCCGCCGAAGGAGGAAGCAAATTATTCGGACCCTGACCCGAACCCGGAAGCTCACCCTAGTTCTCTGGGGATTGTTCCTGTGATGCCCGTCGCACCCATGGCTGTGCCTATCAAAACGGCGAAGCGTTCCTCTACGAAGGACCGCCACACCAAGGTGGAGGGCCGTGGCCGCAGGATCCGATTACCCGCCACTTGCGCCGCTCGGATCTTTCAGCTGACCCGGGAGTTGGGTCACAGGTCAGACGGCGAAACCGTCCGGTGGCTTCTAGAACATGCTGAGAACGCCATCATCGAGGCTACCGGAACCGGCACAGTACCGGCCATCGCCGTCTCCGTCGGCGGCGCTTTGAAAATCCCGACGACGTCGTCTTCCAGCGTTAGCCTCTACCACTCCGACGAAGCCTCCGCCGCCAACGCCAAGAAGCGGAAACGGCCGTCAAGCAGCGAGTTCATAGACGCGAGCGACGCCGTTTCGCTACCGTCCGGTCGGGCCCCGGTTCAAGCTGCGGTGCCGCAGGGTCTGATTCCAGTCTGGGCTGTGGGCAACGGGAACATGGTGGTCCCCGCGAACGCCTTCTGGATGTTCCCGCCGCCGCAGGCGGCGGCCCCCAACCTCACGGTGTCGTCAAACCAGCAACAACCTCAGATGTGGGCTTTGTCTCAGCCGGTGATGGCGGCGAACTTCCCTGAAGCATGGCCGGGGGCGGCGGGTTACAGTGACAACTCATCTATCTCGGCGGTAAGCACGAGCACAGTGGGCCCCATGGTGGCAACGAAGTCCAGCTTGGCACCCAGTGTGAGTTCTAGCTCTAGCGAGAACCATAAGAATGGTGATTGTGGTGGTGGTGGCAATAGCAATGGAAAAACTCAAATGTTAAGGGATTTTTCGTTGGAAATTTACGATAAGCAAGAGTTGCAGTTCATGGGTGGGTCTGGAACTCTCAGTCTCAGACAACAAAACTCGTCCAATCAATGA 1104 0.5833 MSGVTSYHEMDQEDDGFNTDLSTSGGDPPETTTNSHGVSEQALPPKEEANYSDPDPNPEAHPSSLGIVPVMPVAPMAVPIKTAKRSSTKDRHTKVEGRGRRIRLPATCAARIFQLTRELGHRSDGETVRWLLEHAENAIIEATGTGTVPAIAVSVGGALKIPTTSSSSVSLYHSDEASAANAKKRKRPSSSEFIDASDAVSLPSGRAPVQAAVPQGLIPVWAVGNGNMVVPANAFWMFPPPQAAAPNLTVSSNQQQPQMWALSQPVMAANFPEAWPGAAGYSDNSSISAVSTSTVGPMVATKSSLAPSVSSSSSENHKNGDCGGGGNSNGKTQMLRDFSLEIYDKQELQFMGGSGTLSLRQQNSSNQ* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2457 367 MobiDBLite consensus disorder prediction 17 40 - -
Lja4g2457 367 PANTHER TRANSCRIPTION FACTOR TCP9-LIKE 10 356 - -
Lja4g2457 367 Pfam TCP family transcription factor 87 184 IPR017887 -
Lja4g2457 367 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 10 356 IPR005333 GO:0003700
Lja4g2457 367 ProSiteProfiles TCP domain profile. 88 142 IPR017887 -
Lja4g2457 367 MobiDBLite consensus disorder prediction 302 333 - -
Lja4g2457 367 MobiDBLite consensus disorder prediction 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2457 Lja-Chr4 28666104 28667691 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2457 69 351 TCP Transcription Factor Family AT2G45680 45.963 1.12e-67 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lja4g2457 TCP 6.8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2457 - - lja:Lj4g3v1327800.1 685.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2457 4 28666104 28667691 Lja4g2457 4 28666104 28667691 ECH