Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2444 ATGTCACGTTACCGAGGGCCTCGAATCAAAAAGATACGCCGTCTGGGGGCTTTACCGGGACTAACCAGTAAAAGGCCTACAGTCGGAAGCGAACTTAGAAATCAATCGCGCTCCACTAAAAAATCTCAATATCGTATTCGTTTAGAAGAAAAACAAAAATTGCGCTTTCATTACGGTCTTACGGAACGACAATTGCTTAAATACGTTCGTATCGCTGGAAAAGCAAAAGGGTCAACTGGTCAGGTTTTACTACAATTACTTGAAATGCGTTTGGATAACATACTTTTTCGATTAGGTATGGCTTCAACTATTCCTCAAGCCAGACAATTAGTTAACCATAGACATGTTTTCGTTAATGGTCATATAGTAGATATACCAAGTTATCGTTGCAAACCACAAGATATTATTACAGCGAAGGATAACAAAAAATCGAAAGAATTGCCAACCCATTTGACTCTTCAGCCATTCCAATATAAAGGATTAGTAAATCAAATAATAGATAGTAAATGGGTTGGTTTGAAAATTAATGAATTGCTAGTTGTAGAATATTATTCTCGTCAGACTTAA 567 0.3668 MSRYRGPRIKKIRRLGALPGLTSKRPTVGSELRNQSRSTKKSQYRIRLEEKQKLRFHYGLTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHVFVNGHIVDIPSYRCKPQDIITAKDNKKSKELPTHLTLQPFQYKGLVNQIIDSKWVGLKINELLVVEYYSRQT* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2444 188 SMART s4_6 89 152 IPR002942 GO:0003723
Lja4g2444 188 ProSitePatterns Ribosomal protein S4 signature. 87 111 IPR018079 GO:0019843
Lja4g2444 188 Pfam S4 domain 89 136 IPR002942 GO:0003723
Lja4g2444 188 MobiDBLite consensus disorder prediction 20 44 - -
Lja4g2444 188 TIGRFAM rpsD_bact: ribosomal protein uS4 3 186 IPR005709 GO:0003735|GO:0006412|GO:0015935
Lja4g2444 188 CDD S4 89 147 - -
Lja4g2444 188 PANTHER 30S 40S RIBOSOMAL PROTEIN 1 187 IPR022801 -
Lja4g2444 188 SUPERFAMILY Alpha-L RNA-binding motif 3 186 - -
Lja4g2444 188 SMART Ribosomal_S4_2 3 88 IPR001912 GO:0019843
Lja4g2444 188 MobiDBLite consensus disorder prediction 27 41 - -
Lja4g2444 188 Gene3D Ribosomal Protein S4 Delta 41; Chain A, domain 1 3 186 - -
Lja4g2444 188 Gene3D - 88 171 IPR036986 GO:0003723
Lja4g2444 188 Hamap 30S ribosomal protein S4 [rpsD]. 1 186 IPR005709 GO:0003735|GO:0006412|GO:0015935
Lja4g2444 188 PANTHER 30S RIBOSOMAL PROTEIN S4, CHLOROPLASTIC 1 187 - -
Lja4g2444 188 Pfam Ribosomal protein S4/S9 N-terminal domain 3 88 IPR001912 GO:0019843
Lja4g2444 188 ProSiteProfiles S4 RNA-binding domain profile. 89 150 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2444 85 128 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 45.455 2.36e-06 44.3