Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2439 ATGGCGATACATTTATACAAAACTTCTACGGGCACACGCAATCGAGCCGTAGACAGTCAAGTGAAATCCAATCCACGAAATCGTTTGATCTATGGACTACATCGTTGTAGTAAAGGCCGTAATGCCAGAGGAATCATTACCGCAGGGCATGGGGGGGGGGGTCATAAGCGTCTATACCAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACACCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATTAAAATGGGGAATGCCCTACCTTTGAAATCTACTTCAACTGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACATTCAGAAAGGGTGGAAAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCAACATTAAAATTACCTTATGGGGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAAGAGTCGGACAAGTAGGAAATGTTGGGGTAAACCATAAAAGTTTGGGCAGAGCCAGATCGAAATGTTGGCTATGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCACCCCCATGGGGTGGTGAAGGGAGGGCCCCCATTGGTAGAAAAAAACCCGTAA 687 0.4454 MAIHLYKTSTGTRNRAVDSQVKSNPRNRLIYGLHRCSKGRNARGIITAGHGGGGHKRLYQYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLKSTSTDMPLGTAIHNIEITFRKGGKLARAAGAVAKLIAKEGKSATLKLPYGEVRLISKNCSARVGQVGNVGVNHKSLGRARSKCWLCKRPVVRGVVMNPVDHPHGVVKGGPPLVEKNP* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2439 228 TIGRFAM rplB_bact: ribosomal protein uL2 60 219 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Lja4g2439 228 Gene3D Ribosomal protein L2, domain 3 179 227 IPR014726 -
Lja4g2439 228 SMART Ribosomal_L2_2 39 96 IPR002171 GO:0003735|GO:0005840|GO:0006412
Lja4g2439 228 Pfam Ribosomal Proteins L2, C-terminal domain 103 215 IPR022669 GO:0003735|GO:0005840|GO:0006412
Lja4g2439 228 SUPERFAMILY Translation proteins SH3-like domain 105 215 IPR008991 -
Lja4g2439 228 Pfam Ribosomal Proteins L2, RNA binding domain 60 96 IPR022666 GO:0003735|GO:0005840|GO:0006412
Lja4g2439 228 PIRSF RPL2p_RPL2a_RPL8e_RPL2o 10 61 IPR002171 GO:0003735|GO:0005840|GO:0006412
Lja4g2439 228 PIRSF RPL2p_RPL2a_RPL8e_RPL2o 57 222 IPR002171 GO:0003735|GO:0005840|GO:0006412
Lja4g2439 228 Gene3D - 60 94 IPR012340 -
Lja4g2439 228 PANTHER 50S RIBOSOMAL PROTEIN L2, CHLOROPLASTIC 3 227 - -
Lja4g2439 228 Gene3D - 1 59 IPR012340 -
Lja4g2439 228 Gene3D - 96 178 IPR014722 -
Lja4g2439 228 PANTHER RIBOSOMAL PROTEIN L2 3 227 IPR002171 GO:0003735|GO:0005840|GO:0006412
Lja4g2439 228 SUPERFAMILY Nucleic acid-binding proteins 14 103 IPR012340 -
Lja4g2439 228 ProSitePatterns Ribosomal protein L2 signature. 200 211 IPR022671 GO:0003735|GO:0005840|GO:0006412
Lja4g2439 228 SMART Ribosomal_L2_C_2 102 228 IPR022669 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2439 Lja-Chr4 27995957 27997373 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2439 61 215 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 34.503 9.90e-20 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2439 K02886 - tcc:9978159 354.369