Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2430 ATGAACTCAATTTACACTGAGCAGTACTCTCCAGGTTCATCATCATCAGAAGCAAGTTCCTCTAACTGTCACGAGCTAGCATCAGCGAGACCAAAGAAGAGTGCAGGGCGTAGAGTTTTCAAGGAGACGAGGCACCCTGTGTACCGAGGAGTAAGGAGCAGGAACAACAACAAATGGGTCTGCGAGGTGCGTGTTCCCAATGACAAGACCACAAGGATATGGCTCGGAACACACACGACGCCTGAGATGGCGGCGCGTGCACACGACGTTGCGGCGCTCGCTCTTCGTGGGAAGTCCGCTTGCCTTAACTTCGCGGACTCCGCGTGGAGGGTTCCGCCGTTGTTGCCAGCATCAAACAGTGCGAAGGAGCTTAGGAGAGTGGCAATAGAAGTTGCTCATGCGTTTGCGGCTGAGGACCGTTGTCATGATCAGGTCTGTAGCAGCGGCGACAGCGTATCGGAAGGTTTGTTTTTGGAATTCGATGAAGTTGTGTCTTCGGAGTTTCAGGAGCAGGATTTGCAAGATTGGCTTCGGAGCATGGAGGATGAGCCTTTGAGATCACCGGCGCACCCGTTTGAGGGATCATCATACGGTACGGAGAATTGGACTATTGAAGATGTGGATGTGGAACATGAGGTTTCCTTGTGGAGTTTTTCCATCTGA 663 0.5219 MNSIYTEQYSPGSSSSEASSSNCHELASARPKKSAGRRVFKETRHPVYRGVRSRNNNKWVCEVRVPNDKTTRIWLGTHTTPEMAARAHDVAALALRGKSACLNFADSAWRVPPLLPASNSAKELRRVAIEVAHAFAAEDRCHDQVCSSGDSVSEGLFLEFDEVVSSEFQEQDLQDWLRSMEDEPLRSPAHPFEGSSYGTENWTIEDVDVEHEVSLWSFSI* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2430 220 Pfam AP2 domain 46 97 IPR001471 GO:0003700|GO:0006355
Lja4g2430 220 SUPERFAMILY DNA-binding domain 47 107 IPR016177 GO:0003677
Lja4g2430 220 CDD AP2 48 107 IPR001471 GO:0003700|GO:0006355
Lja4g2430 220 SMART rav1_2 47 111 IPR001471 GO:0003700|GO:0006355
Lja4g2430 220 MobiDBLite consensus disorder prediction 1 37 - -
Lja4g2430 220 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 18 152 IPR045277 GO:0003700
Lja4g2430 220 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 165 220 - -
Lja4g2430 220 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Lja4g2430 220 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Lja4g2430 220 Gene3D AP2/ERF domain 47 106 IPR036955 GO:0003700|GO:0006355
Lja4g2430 220 ProSiteProfiles AP2/ERF domain profile. 47 105 IPR001471 GO:0003700|GO:0006355
Lja4g2430 220 MobiDBLite consensus disorder prediction 1 27 - -
Lja4g2430 220 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 165 220 IPR045277 GO:0003700
Lja4g2430 220 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 18 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2430 Lja-Chr4 27764895 27765557 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2430 6 218 AP2-EREBP Transcription Factor Family AT5G51990 46.575 9.93e-51 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja4g2430 AP2 2.5e-12 CL0081