Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2428 ATGAACTCAATTGACACAGAGCAGTACTCTGGAGGTTCATCATCGGAAGCAGGTTCCTCTAACCTACACGAGCTAGCATCAGGGAGACCAAAGAAATGTGCAGGGCGTCGAGTATTCAAGGAGACGAGGCACCCTGTGTACCGAGGAGTGAGGAGCAGGAACAACAACAAATGGGTGTGCGAGGTGCGTGTTCCGAATGACAAGACCACCAGGATATGGCTCGGAACACACCCTACCCCAGAGATGGCGGCGCGTGCGCACGATGTAGCGGCGCTGGCGCTTCGTGGGAAGTCCGCTTGCCTCAACTTCGCGGACTCCGCGTGGAGGGTGCCGCCGTTGTTGCCGGCGTCAAACAGTGCGAAGGAGCTTAGGAGAGTGGCAATAGAAGTTGCTCATGCGTTTGCGGCTGAGGACTGTTGTAATGGCCAGCAGCAGCAGCAAACTTATAATAATGTTTGTAGCAGCGGCGACAACTTTGGAGTCGGGGAAAGTGTCATGGAAGATAATAATAATAATAACAATAAAACTAATAATGATAATGATAATAACAATAATGGAAACCCTTTGCACTTAGAAGGGTTGTGTTTGGAATTCGATGAAGTTCTTCAGGGTGTGTCGTCGGGGTTTCAGGAGCAGGACTTGCAGGATTGGCTTCGGAACATGGAGGATGAGCCTTTAAGATCTCCGCAGCACCCATTCGAGGGACCATCATATGGTACGGAGTGCTGGAGTATTGATGATGTGGATGTGGAACATGAGGTGTCCTTGTGGAGTTTTTCCCTCTGA 786 0.5051 MNSIDTEQYSGGSSSEAGSSNLHELASGRPKKCAGRRVFKETRHPVYRGVRSRNNNKWVCEVRVPNDKTTRIWLGTHPTPEMAARAHDVAALALRGKSACLNFADSAWRVPPLLPASNSAKELRRVAIEVAHAFAAEDCCNGQQQQQTYNNVCSSGDNFGVGESVMEDNNNNNNKTNNDNDNNNNGNPLHLEGLCLEFDEVLQGVSSGFQEQDLQDWLRNMEDEPLRSPQHPFEGPSYGTECWSIDDVDVEHEVSLWSFSL* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2428 261 Pfam AP2 domain 45 96 IPR001471 GO:0003700|GO:0006355
Lja4g2428 261 ProSiteProfiles AP2/ERF domain profile. 46 104 IPR001471 GO:0003700|GO:0006355
Lja4g2428 261 SMART rav1_2 46 110 IPR001471 GO:0003700|GO:0006355
Lja4g2428 261 Gene3D AP2/ERF domain 46 105 IPR036955 GO:0003700|GO:0006355
Lja4g2428 261 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 19 260 - -
Lja4g2428 261 SUPERFAMILY DNA-binding domain 46 106 IPR016177 GO:0003677
Lja4g2428 261 MobiDBLite consensus disorder prediction 163 186 - -
Lja4g2428 261 MobiDBLite consensus disorder prediction 1 22 - -
Lja4g2428 261 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 19 260 IPR045277 GO:0003700
Lja4g2428 261 CDD AP2 47 106 IPR001471 GO:0003700|GO:0006355
Lja4g2428 261 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Lja4g2428 261 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Lja4g2428 261 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2428 Lja-Chr4 27750233 27751018 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2428 25 142 AP2-EREBP Transcription Factor Family AT1G12610 67.797 2.39e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lja4g2428 AP2 4.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2428 - - lja:Lj4g3v1333590.1 496.508