Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2427 ATGAACTCGATTGACACAGAGCAGTACTCTGCAGGTTCATCATCTGAAGCTTGCTCGGATATGATGCTAGCATCAGCTAGGCCAAAGAAGTGTGCAGGGCGTCGAGTGTTCAAGGAGACAAGGCACCCTGTGTACCGAGGAGTGAGGAGCAGGAACAACAACAAGTGGGTGTGCGAGGTTCGTGTTCCCAATGACAAAACAACCAGGATATGGCTCGGCACCCACCAGACACCTGAGATGGCGGCCCGTGCGCACGACGTTGCGGCGCTCGCGCTTCGTGGGAAGTCCGCTTGCCTCAACTTCGCGGACTCCGCGTGGAGGGTGCCGCCGTTGTTGCCGGCGTCAAACAGTGCAAAGGAGCTTAGGAGAGTGGCAACGGAAGTTGCACATGCGTTTGCGGCTGAGGACCGTTGCCATGGCCAGCAACAGCAGCAGCAGCAAACTTATAATGGTGATCAGCTCTGTAGCACCGGTGACAGCGTTGAAGTTGTGGAAAACAGTAATAATAGTGATAAAACATTGCATGAGTTGGAAAGGTTGTGTTTTGAATTCGATGAAGTACTTCCTCAGGGTGGTATTGAGGAAGAACAGGACCTGCATGGTTGGATTCGGAACATGGAGGATGAGCCTTTAAGATCTCCACAGCATCCATTTGAGGGATCATATGGTAATTACAGTGTGGAGAACTTGAGTATTGATGATGTGGATGTGGAGGTTTCCTTGTGGAGTTTTTCCATCTGA 741 0.5128 MNSIDTEQYSAGSSSEACSDMMLASARPKKCAGRRVFKETRHPVYRGVRSRNNNKWVCEVRVPNDKTTRIWLGTHQTPEMAARAHDVAALALRGKSACLNFADSAWRVPPLLPASNSAKELRRVATEVAHAFAAEDRCHGQQQQQQQTYNGDQLCSTGDSVEVVENSNNSDKTLHELERLCFEFDEVLPQGGIEEEQDLHGWIRNMEDEPLRSPQHPFEGSYGNYSVENLSIDDVDVEVSLWSFSI* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2427 246 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
Lja4g2427 246 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Lja4g2427 246 SMART rav1_2 44 108 IPR001471 GO:0003700|GO:0006355
Lja4g2427 246 Pfam AP2 domain 43 94 IPR001471 GO:0003700|GO:0006355
Lja4g2427 246 SUPERFAMILY DNA-binding domain 44 104 IPR016177 GO:0003677
Lja4g2427 246 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 21 246 - -
Lja4g2427 246 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 21 246 IPR045277 GO:0003700
Lja4g2427 246 Gene3D AP2/ERF domain 44 103 IPR036955 GO:0003700|GO:0006355
Lja4g2427 246 CDD AP2 45 104 IPR001471 GO:0003700|GO:0006355
Lja4g2427 246 ProSiteProfiles AP2/ERF domain profile. 44 102 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2427 Lja-Chr4 27741372 27742250 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2427 20 136 AP2-EREBP Transcription Factor Family AT1G12610 67.521 1.97e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lja4g2427 AP2 1.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2427 - - lja:Lj4g3v1333590.1 355.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2427 4 27741372 27742250 Lja4g2427 4 27741372 27742250 ECH
Lja4g2427 4 27741372 27742250 Lja4g2426 4 27581441 27582655 PCT