Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2426 ATGAATTCACTTGAAGAATCTAGTTACGAGCACTACTCATGTTCATCATCAGAAACGACGAGTTCCTCCTCTAACCGTAATGAAGAAGCTATCATCACACTAGCATCAGCGAAGCCAAAGAGGCGTGCGGGGCGAAGAATATTCAAGGAGACGAGGCACCCGGTGTACAGAGGAGTGAGGAGGAGGAACAACGACAAGTGGGTCTGCGAGGCGCGTGTTCCCAACGAGAAGAACGGCAGGATTTGGCTCGGAACGTATCCGACCCCTGAGATGGCGGCGCGTGCGCACGACGTTGCGGCGCTCGCGCTTCGTGTGAAGTCCGCTTGCCTCAACTTTGCGGACTCCGCGTGGCGGATTCCACCGTTGTTGCCGGCGTCGAACTGTAAGAAGGAGATAAGAAGGGTGGCGGGGGAGGTTGCTGAGGCGTTTGTCGTTGAGGATATTGATGGTGATGAGGTTTGTAGCAGCAACAGCGTTAATGAGAATGAAAAACCGTTGCAGTTGAAGGGGTTGTGTTTGGATATTGAAGTTCTGGGTGGTGTGTCGTCGGGGTTGCAGGCGGAGCAGGAGCTGCATGATTGGCTTCGGAGAATGGTGGATGAGCCTCTACGATCTCCACAGCATGCATTTGTGGGATCATATGGTTGGGATTGGAGTGATGTGCAGGGTGATACTGAGGTTTCCTTGTGGAGTTTTGCTATTTGA 705 0.5277 MNSLEESSYEHYSCSSSETTSSSSNRNEEAIITLASAKPKRRAGRRIFKETRHPVYRGVRRRNNDKWVCEARVPNEKNGRIWLGTYPTPEMAARAHDVAALALRVKSACLNFADSAWRIPPLLPASNCKKEIRRVAGEVAEAFVVEDIDGDEVCSSNSVNENEKPLQLKGLCLDIEVLGGVSSGLQAEQELHDWLRRMVDEPLRSPQHAFVGSYGWDWSDVQGDTEVSLWSFAI* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2426 234 Gene3D AP2/ERF domain 55 114 IPR036955 GO:0003700|GO:0006355
Lja4g2426 234 ProSiteProfiles AP2/ERF domain profile. 55 113 IPR001471 GO:0003700|GO:0006355
Lja4g2426 234 SMART rav1_2 55 119 IPR001471 GO:0003700|GO:0006355
Lja4g2426 234 SUPERFAMILY DNA-binding domain 55 115 IPR016177 GO:0003677
Lja4g2426 234 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700|GO:0006355
Lja4g2426 234 PRINTS Ethylene responsive element binding protein signature 79 95 IPR001471 GO:0003700|GO:0006355
Lja4g2426 234 CDD AP2 56 115 IPR001471 GO:0003700|GO:0006355
Lja4g2426 234 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 2 234 IPR045277 GO:0003700
Lja4g2426 234 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2 234 - -
Lja4g2426 234 Pfam AP2 domain 54 104 IPR001471 GO:0003700|GO:0006355
Lja4g2426 234 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2426 Lja-Chr4 27581441 27582655 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2426 32 232 AP2-EREBP Transcription Factor Family AT1G12610 49.289 1.03e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja4g2426 AP2 4.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2426 - - lja:Lj4g3v1333590.1 259.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2427 4 27741372 27742250 Lja4g2426 4 27581441 27582655 PCT