Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2423 ATGGCCTCATCATCATCATCATCTTCCAAGAGGCATCCAGTCTACCATGGAATCCGGTGCCGGCGAGGAAAATGGGTCACTGAAATCCGGGAGCCACGCAAGGACACACGCATATGGCTGGGAACGTACCCCACCCCTGAGATGGCCGCCGCTGCCTATGATGTGGCGGCGCTGGCCCTAAAAGGCGGTGGAGCAGTTCTCAACTTCCCTGACTCCGCCGACAAGTATCCGGTGCCGGCATCCAAATCCCCTGCGGACATCCGCAGTGCTGCTACTGCTGCTGCGCAACAAATGGAGGAAACTGATGCTGCTGCTGCTGCAGCAGCAGCTGGGAACACAGACACAGTTCATGAGCCTCCTAATAACATTGATGCTGTTGCTGATGCCACTCTTTTGTCTGAAACTGAATTTATGGATGAGGAAGCCATATTCTTCATGCCAAATTTGCTGATCGACATGGCTGAGGGAATGCTGCTGTCTCCTCCCAGAATGAACCCACCACCGTCGCCTGATAATTCTGGTGGAGAAAGTTTGTGGAACTATTTTTGA 549 0.5319 MASSSSSSSKRHPVYHGIRCRRGKWVTEIREPRKDTRIWLGTYPTPEMAAAAYDVAALALKGGGAVLNFPDSADKYPVPASKSPADIRSAATAAAQQMEETDAAAAAAAAGNTDTVHEPPNNIDAVADATLLSETEFMDEEAIFFMPNLLIDMAEGMLLSPPRMNPPPSPDNSGGESLWNYF* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2423 182 ProSiteProfiles AP2/ERF domain profile. 14 70 IPR001471 GO:0003700|GO:0006355
Lja4g2423 182 SUPERFAMILY DNA-binding domain 14 72 IPR016177 GO:0003677
Lja4g2423 182 CDD AP2 15 72 IPR001471 GO:0003700|GO:0006355
Lja4g2423 182 Pfam AP2 domain 13 62 IPR001471 GO:0003700|GO:0006355
Lja4g2423 182 Gene3D AP2/ERF domain 14 71 IPR036955 GO:0003700|GO:0006355
Lja4g2423 182 SMART rav1_2 14 76 IPR001471 GO:0003700|GO:0006355
Lja4g2423 182 MobiDBLite consensus disorder prediction 161 182 - -
Lja4g2423 182 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 3 182 - -
Lja4g2423 182 PANTHER ETHYLENE RESPONSE FACTOR 3 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2423 Lja-Chr4 27419954 27420632 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2423 9 181 AP2-EREBP Transcription Factor Family AT5G52020 55.249 2.53e-48 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja4g2423 AP2 6e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2423 - - pop:7490917 192.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2423 4 27419954 27420632 Lja4g2423 4 27419954 27420632 ECH
Lja4g2423 4 27419954 27420632 Lja4g2423 4 27419954 27420632 PCT