Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2415 ATGTTGGCTGGGTGTTCTAGTCCGGCATTGTCATCACCGAGGCACAGATTGAGGAGTGAAGCATCAGCACAGTTTCAAGCTTGCCATTTCCAGTTACCTTCCATGAGCACACAGAGATTGGACTTGCCACGCAGCGCTTTCCCTCGGAAAGACACAACAACGACCTCTTCACGCTCGCAGCCATTGAGGCCTGTGGGGATTTCAGTGGAGAAAACCAATGAATCCAAGAGCAGCACTTGTTCTCTGAAGCAGAACATTCGTCTTCCACCTCTGGCTACAACAACAGCGTCACTAGGAGGAGATATCATCAAGGGTGAGGAGTTTTGGGAGAAGAAGAGTACCAAGAGTTTGAAGAGAGTTGCAGAGCATGGAGATGATGATGATGATGATGAGTCCTTCACCAGCAGATACAAGAGGAAAAAGGGTAATGGGAATTCTGATGAGGTTCTTGAAGCAGGGGAAAATTTTGGAAGCTTTTGGTCTGTTCATAGTTTTGGAGGCCTTAACCTTCCTTCTTCACTTCCTTTCTCTCTGAATTGTTCTGGGGATGAAGAGAGGGTGTGTTTTGCTCCTGCTGAAGTGATTTCTGCACCTTTGCCTTTCTCAAACAACAATCCTTGGCTGGAATCTGCTGTAACAACAATCACCAATTTTGGTGAGGGAAGCCACCAACACCAGCAGCATGTTAAGGAAGGTTCAGTCTCCAATGATTCATCAGATAGCCAGAGCTTGAGCCTGAGGTTGAATGAGAATGTTACATCAGAACTTGAAGTGGGAAATGGTTCAGGGAATCCTCATCACCATGAAGTGGAGACAGGGGAAGAGGATGAACAAGAGGAGCATCGTGGGTTTGAGCTTGTAAGCTTTCTCACTGGTTGTGTTGATGCCATTTCTTCAAGGAATGTGACTGCTATCAACCATTTCATTGCAAAATTGGGTGAACTTGCATCTCCAAGAGGAAGAACCTCCATAAGCCGCATTTGTGCTTATTTCACTGAAGCCTTAGCCATCAGAATCACCAGGCTCTGGCCTCATGTTTTTCATGTCACCACTATCCCTCGGGTTTTGGATGATGATGAAACCGTCACTGCACTGAGGCTTCTCAACCAGATCACCCCAGTTCCCAAGTTTCTCCATTTCACATCAAATGAGATGCTGCTGAGGGCTTTTGAAGGGAAAGACAGGGTTCACATCATAGATTTTGACATTAAGCAAGGTCTTCAATGGCCTAGCTTGTTCCAAAGCTTAGCCTCCAGAACTCATCCTCCAAGCCATGTTAGAATCACTGGTGTGGGGGAATCTAAGCAAGAGCTGAATGAAACTGGAGACAGACTTGCAGGTTTTGCTGAGGCACTGAACCTTCCCTTTGAGTTTCACCCAGTTGTGGATAGGCTTGAAGATGTTAGGCTATGGATGCTTCATGTGAAGGAGCATGAGAGTGTGGCTGTGAATTGCTTTTTGCAGCTCCACAAGACTCTCTATGATGGTAGTGGAGGAGCATTGAGGGATTTCTTAGGCCTAATTCGCAGCACGAATCCTACTATTGTTGTCATGGCAGAGCAGGAAGCAGAACACAATGAAGCAAGGTTGGAAACAAGGGTGTGCAATTCCTTGAAATACTACTCAGCTCTGTTTGATTCCATTGACCACATTGGCCTTCAAGAACAAAGCCCTGTGAGGATCAAGATAGAGGAGATGTATGCAAGGGAGATAAGGAACATCATTGCTTGTGAAGGGAGGGAGAGAGCGGAGAGGCACGAGAGTTTCGCGAAATGGAGGAAGTTGATGGTGGAGCAAGGAGGGTTCAGATGCATGGGAGTTACTGAGAGGGAATTGGTTCAGAGCCGGTTTCTGTTGAAGATGTATTCCTGTGAGAATTACAGTGTGATGAAGCAGGAGGAGGATGGTGGAGAAGGACTCACTTTGGGTTGGCTTGATCAGCCTCTCTACACGGTCTCGGCATGGACACCGGTTGATGCAGCAGGAAGTTCATCATCATTTTCTCAGCCAGCTTGA 2016 0.4678 MLAGCSSPALSSPRHRLRSEASAQFQACHFQLPSMSTQRLDLPRSAFPRKDTTTTSSRSQPLRPVGISVEKTNESKSSTCSLKQNIRLPPLATTTASLGGDIIKGEEFWEKKSTKSLKRVAEHGDDDDDDESFTSRYKRKKGNGNSDEVLEAGENFGSFWSVHSFGGLNLPSSLPFSLNCSGDEERVCFAPAEVISAPLPFSNNNPWLESAVTTITNFGEGSHQHQQHVKEGSVSNDSSDSQSLSLRLNENVTSELEVGNGSGNPHHHEVETGEEDEQEEHRGFELVSFLTGCVDAISSRNVTAINHFIAKLGELASPRGRTSISRICAYFTEALAIRITRLWPHVFHVTTIPRVLDDDETVTALRLLNQITPVPKFLHFTSNEMLLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRTHPPSHVRITGVGESKQELNETGDRLAGFAEALNLPFEFHPVVDRLEDVRLWMLHVKEHESVAVNCFLQLHKTLYDGSGGALRDFLGLIRSTNPTIVVMAEQEAEHNEARLETRVCNSLKYYSALFDSIDHIGLQEQSPVRIKIEEMYAREIRNIIACEGRERAERHESFAKWRKLMVEQGGFRCMGVTERELVQSRFLLKMYSCENYSVMKQEEDGGEGLTLGWLDQPLYTVSAWTPVDAAGSSSSFSQPA* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2415 671 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 8 660 IPR005202 -
Lja4g2415 671 MobiDBLite consensus disorder prediction 220 260 - -
Lja4g2415 671 MobiDBLite consensus disorder prediction 48 63 - -
Lja4g2415 671 ProSiteProfiles GRAS family profile. 277 656 IPR005202 -
Lja4g2415 671 MobiDBLite consensus disorder prediction 220 281 - -
Lja4g2415 671 MobiDBLite consensus disorder prediction 262 281 - -
Lja4g2415 671 MobiDBLite consensus disorder prediction 119 147 - -
Lja4g2415 671 Pfam GRAS domain family 287 656 IPR005202 -
Lja4g2415 671 MobiDBLite consensus disorder prediction 39 66 - -
Lja4g2415 671 PANTHER SCARECROW-LIKE PROTEIN 28 8 660 IPR030027 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2415 Lja-Chr4 27281944 27285174 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2415 1 656 GRAS Transcription Factor Family AT1G63100 54.857 0.0 673
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lja4g2415 GRAS 7e-123 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2415 - - pper:18776291 882.863