Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2411 ATGGCATCCTCATCGTCAACCACCACCAACACCACCGTCGGCTACGACGTCCCATGGGTGGAGAAGTACCGACCCTCCAAGGTCGCCGACATCGTCGGCAACCAAGACGCCGTCTCTCGCCTCCAAGTCATCGCTCGCGACGGCAACATGCCCAACCTCATTCTCTCCGGTCCTCCCGGCACCGGCAAAACCACCAGCATTCTCGCCCTCGCGCATGAGCTTCTCGGTCCCAATTGCAAAGAAGCAGTTCTTGAACTCAATGCATCAGATGATAGAGGAATAGATGTTGTGAGGAACAAGATCAAGATGTTTGCTCAAAAGAAAGTAACGCTGCCGCCGGGCCGACACAAGATAGTTATACTGGATGAAGCTGACAGCATGACAACCGGAGCACAGCAAGCCTTGAGAAGGACAATTGAGATATATTCCAATACTACTCGTTTCGCTCTTGCTTGTAACACATCGGCTAAGATTATTGAGCCGATTCAGAGTAGATGTGCCATTGTGCGGTTTTCGCGATTATCTGATCAAGAGATACTTGGTCGCCTCATGATTGTGGTTAAAGCTGAGAAGGTTCCCTATGTTCCTGAAGGACTTGAGGCCATCATCTTCACTGCTGATGGTGATATGAGGCAGGCATTGAATAACTTGCAAGCAACATACAGCGGGTTCCAGTTTGTCAACCAAGCAAATGTTTTTAAGGTTTGTGATCAGCCGCATCCACTGCATGTGAAGAATATGGTGCGCAATGTGATTGAAGGGAATTTTGATGAGGCTTGTACGGGGCTCAAACAACTGTATGACTTAGGATATTCTCCCACAGATATCATCACCACACTCTTTCGTATAATAAAGAATTATGATATGGCAGAGTACATGAAACTAGAATTCATGAAGGAAACTGGATTTGCTCATATGAGAATATGTGATGGAGTTGGTTCTTATCTTCAGCTGTGTGGCCTATTGGCTAAGCTTTTTCTAGTTCGTGAAACTGCTAAAGCTGCATGA 1008 0.4683 MASSSSTTTNTTVGYDVPWVEKYRPSKVADIVGNQDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNCKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTTGAQQALRRTIEIYSNTTRFALACNTSAKIIEPIQSRCAIVRFSRLSDQEILGRLMIVVKAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFQFVNQANVFKVCDQPHPLHVKNMVRNVIEGNFDEACTGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYMKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLFLVRETAKAA* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2411 335 Pfam Replication factor C C-terminal domain 239 324 IPR013748 -
Lja4g2411 335 PANTHER REPLICATION FACTOR C SUBUNIT 2 5 333 - -
Lja4g2411 335 CDD HLD_clamp_RFC 174 236 - -
Lja4g2411 335 SMART AAA_5 49 175 IPR003593 -
Lja4g2411 335 CDD AAA 32 169 - -
Lja4g2411 335 Gene3D - 11 174 IPR027417 -
Lja4g2411 335 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 5 333 - -
Lja4g2411 335 Gene3D - 175 238 - -
Lja4g2411 335 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 236 IPR027417 -
Lja4g2411 335 Pfam ATPase family associated with various cellular activities (AAA) 53 171 IPR003959 GO:0005524|GO:0016887
Lja4g2411 335 SUPERFAMILY post-AAA+ oligomerization domain-like 238 329 IPR008921 GO:0003677|GO:0006260
Lja4g2411 335 Gene3D - 239 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2411 Lja-Chr4 27152268 27156384 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2411 14 334 Core DNA Replication Machinery Family AT1G63160 91.900 0.0 622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2411 K10755 - gmx:100781364 620.928