Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2410 ATGGCGACCACGAGGTCCCCGGAGGACGCCGCCGCCGATCCAACGCCGTTGATCGGGAGGACGTCCTCCGACGAGTCGAACTCCGGCCGGAGACTCAACCGCCGTCCGAGTCTCCGACAGGCGGCGCGGTTCCTGAGGCAGGCGAGTGGGAGGAGGATGATGCGCGAGCCGTCGATGGTGGTGAGGGAGACTGCGGCGGAGCAGTTGGAAGAACGGCAGAGCGATTGGGCGTATTCGAAGCCTGTTGTGGTTCTTGATATTCTCTGGAACTTTGTTTTTGTTGTTGCGGCCGCTACGGTGTTGGTTTTGAGCCGGAGTGAGACGCCGAGTACGCCTCTCAGGTTGTGGATTTTGGGGTACGCTTTGCAGTGTGTGGTCCATGTTGTCTGCGTTTGTGTTGAGTTTCGGAAGCGGAGGCGGCGGCGGGAACAGCCCGACGGTGAAGCCGTTGGGGGGAGTGGAGATTTGAGCTCCGGTTCATTGGATGGTTCTGGGAATTATGCGAATTTGGGGCAGTTTGAGGACCCTGGTACAAGTATGGCAAAACATTTGGAATCAGCCAACACAATGTTCTCTTTTATTTGGTGGGTCATTGGATTCTATTGGGTTTCAGCTGATGGTCAAACTTTGGCCCAAGATTCTCCTCAACTTTACTGGTTATGTATAGTCTTCCTGGGTTTTGATGTCTTCTTCGTTGTTTTCTGCATTGCCCTGGCATGCATCATTGGTATTGCTGTTTGCTGTTGTCTTCCGTGTATCATTGCACTTCTATATGCAGTTGCAGACCAGGAAGGGGCATCGCAGGAAGACATTGAGCAGTTGTCAAAATTCAAATTCCAAAGAAAAAGTAATGAGAAACTTGCTGGTGACACAGAAGGACCTGTTGGTGGAATAATGACTGAATGCCATTCTGATTCGCCAACTGAACATATGCTTTCTGCTGAGGATGCGGAATGTTGCATTTGCCTATCTGCTTATGACGATGGGGTTGAATTACGACAACTTCCTTGCGGTCACCATTTTCACTGTGCCTGCGTGGACAAATGGCTGTGTATGAATGCTACTTGCCCCCTCTGCAAGTATAACATCTTGAAAAGTAGCAGCCTTGGTCAGGAGGAAGTGTAG 1125 0.5129 MATTRSPEDAAADPTPLIGRTSSDESNSGRRLNRRPSLRQAARFLRQASGRRMMREPSMVVRETAAEQLEERQSDWAYSKPVVVLDILWNFVFVVAAATVLVLSRSETPSTPLRLWILGYALQCVVHVVCVCVEFRKRRRRREQPDGEAVGGSGDLSSGSLDGSGNYANLGQFEDPGTSMAKHLESANTMFSFIWWVIGFYWVSADGQTLAQDSPQLYWLCIVFLGFDVFFVVFCIALACIIGIAVCCCLPCIIALLYAVADQEGASQEDIEQLSKFKFQRKSNEKLAGDTEGPVGGIMTECHSDSPTEHMLSAEDAECCICLSAYDDGVELRQLPCGHHFHCACVDKWLCMNATCPLCKYNILKSSSLGQEEV* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2410 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 304 372 IPR013083 -
Lja4g2410 374 MobiDBLite consensus disorder prediction 1 36 - -
Lja4g2410 374 SUPERFAMILY RING/U-box 309 366 - -
Lja4g2410 374 SMART ring_2 319 359 IPR001841 -
Lja4g2410 374 CDD RING-H2_RNF111_like 318 362 - -
Lja4g2410 374 Pfam Ring finger domain 318 360 IPR001841 -
Lja4g2410 374 PANTHER TARGET OF ERK KINASE MPK-1 3 374 - -
Lja4g2410 374 ProSiteProfiles Zinc finger RING-type profile. 319 360 IPR001841 -
Lja4g2410 374 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2410 Lja-Chr4 27089376 27093411 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2410 1 367 C3H Transcription Factor Family AT1G68070 48.649 1.40e-118 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2410 - - gmx:100779757 577.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2410 4 27089376 27093411 Lja4g2410 4 27089376 27093411 ECH
Lja4g2410 4 27089376 27093411 Lja4g2410 4 27089376 27093411 PCT