Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2401 ATGAGAGAAACAATGTTGTCATCCATTTTTCATTCTTATATTGTGTACCTAGGATCACATTCCTTCGGTTCAAATCCCACATCAGTTGATGCTGAATCAGCCACAAACTTCCACTATGATTTACTTGGATCTTACGTTGGAAGCACAGAGAAGGCAAAGGAAGCAATATTTTATTCATATAATAGATATATTAATGGCTTTGCTGCAGTCCTTGATGAAGATGAAGCCGCAAATATTGCAAAGCATCCGAATGTAGTATCAGTTTTCTTAGACAGAGAACATAAATTGGCCACAACTCACTCATGGAATTTCCTTGGTATGGAGGAAAAGGGTAAAATTCCAAAGGCATCAATATGGCAAAGATCACTAGGAGAAGACATCATCATTGGAAATATAGACACAGGTGTTTGGCCTGAATCCAAGAGTTTTAGTGATGAAGGGATGGGTCCAGTCCCAACCAAGTGGCATGGAAAATGTGAAGTGGACAAGAAAAACAAAGACAAGTTTCACTGCAACAGGAAGTTGATTGGGGCAAAATATTTTTACAAAGGTTATCAGGCATTCGGTTTTCATGGAAAAAATATTTCATATGCTAGTGCTCGCGACTTTGATGGTCATGGTACACATACTTTATCAACGGCGGGAGGAAACTTTGTTTATGGAGCAAGTGTTTTTGGCAATGGAAAGGGAATCGCGAGCGGCGGGTCACCAAAAGCACGGGTTGCATCCTATAAGGTGTGTTGGGGTCCAAGTGGATGTTTTGGAACAGACATTTTGGCTGCTTTTGAAGCTGCCATTGGTGACGGCGTTGATGTGCTTTCGATGTCTATAATTTATAATGTTACAACCCCTGTCAACATTTTTGAAAGTGGTATATCCATTGGATCCTTCCATGCAGTTTCTCATGGCGTAGTTGTTGTGAGCTCTGGAGGAAACTCTGGACCTTCTCCTAATACCGTATGCAACTTGGAACCATGGATGCTCACAGTTGCTGCAAGCACAATTGATAGAGAGTTCTCGAGTTATGTCACTCTTGGCAACAAGAAAATCCTCAAGAGTAAAGTTCCTACTAACCATGGTAATACTGTTGGAATGATTTTGGCTAATAACAAATATGCAGGGAATCAAATTACTGCTGACCCTCATGTGCTCCCTGCTTCACATATAAACTTTGAGGATGGTAGTTACATTTTTAATTACATCAACCATACAAAGTCTCCCCAGGCTTACATTTCTAGAGTGCAAACAAAACTTGGTGTAAATCCATCTCCAATTATGGCTGCATTTTCATCAAGGGGGCCAAATCTTCTTGAGGAAGCAATCCTCAAGCCTGACATCACTGCACCAGGAGTTAACATTGTCGCTGCTTATAGTGAAGCTGCATCTCCAACAGAAGAGTTAACTGATAAGCGCAAGATCCCTTTCACTTCAATGTCAGGCACTTCAATGTCATGTCCTCATGTTTCTGGCATTGTTGGGTTGCTTAAATCTCTTCATCCGGATTGGAGTCCGGCCGCTATCAAGTCAGCAATAATGACCACAGCAAGTACCAAAGATAAATTTGGAAGGCCGATTCTGGATTCATCAATGAACGAGGCAACTCCATTTGCTTATGGTGCAGGGCACATTCAACCTAATCGTGCCATGGACCCGGGACTTGTATATGACCTTAACATTGATGATTATTTGAACTTCTTATGTGGTCGCGGCTACACGAGTTCCCAACTTAAGGTGTTTTACGCCAAGCCTTACACTTGTCCAGAGTCATTCAATATAGCAACAGATTTCAACTATCCAGCAATCACAGTTGCTAACCTTCTCTTTGGACATTCAGTTAATGTTACTCGTACTCTTACCAATGTTGGGTCCCCAAACGAGTATAGAGTGCACATCAAGGCACCTCCACATGTTTTAGTTTCAGTTGAACCTAGCAGATTAAGCTTTAAAGAAAAAGGTGAAAAAAAGGAGTTCACAGTTACATTGACCTTAACGTCGCCAAGTGAGGATTATGTCTTTGGAAGGTTGGTTTGGACCGATGATAAGCACCATGTCAATACACCTATTACAGTTAAGATGCATGCTTGCCACACTAGTGGATTTTAG 2103 0.4132 MRETMLSSIFHSYIVYLGSHSFGSNPTSVDAESATNFHYDLLGSYVGSTEKAKEAIFYSYNRYINGFAAVLDEDEAANIAKHPNVVSVFLDREHKLATTHSWNFLGMEEKGKIPKASIWQRSLGEDIIIGNIDTGVWPESKSFSDEGMGPVPTKWHGKCEVDKKNKDKFHCNRKLIGAKYFYKGYQAFGFHGKNISYASARDFDGHGTHTLSTAGGNFVYGASVFGNGKGIASGGSPKARVASYKVCWGPSGCFGTDILAAFEAAIGDGVDVLSMSIIYNVTTPVNIFESGISIGSFHAVSHGVVVVSSGGNSGPSPNTVCNLEPWMLTVAASTIDREFSSYVTLGNKKILKSKVPTNHGNTVGMILANNKYAGNQITADPHVLPASHINFEDGSYIFNYINHTKSPQAYISRVQTKLGVNPSPIMAAFSSRGPNLLEEAILKPDITAPGVNIVAAYSEAASPTEELTDKRKIPFTSMSGTSMSCPHVSGIVGLLKSLHPDWSPAAIKSAIMTTASTKDKFGRPILDSSMNEATPFAYGAGHIQPNRAMDPGLVYDLNIDDYLNFLCGRGYTSSQLKVFYAKPYTCPESFNIATDFNYPAITVANLLFGHSVNVTRTLTNVGSPNEYRVHIKAPPHVLVSVEPSRLSFKEKGEKKEFTVTLTLTSPSEDYVFGRLVWTDDKHHVNTPITVKMHACHTSGF* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2401 700 PRINTS Subtilisin serine protease family (S8) signature 479 495 IPR015500 -
Lja4g2401 700 PRINTS Subtilisin serine protease family (S8) signature 202 215 IPR015500 -
Lja4g2401 700 PRINTS Subtilisin serine protease family (S8) signature 124 143 IPR015500 -
Lja4g2401 700 PANTHER PEPTIDASE S8 9 353 - -
Lja4g2401 700 PANTHER PEPTIDASE S8 359 692 - -
Lja4g2401 700 Gene3D Peptidase S8/S53 domain 373 565 IPR036852 GO:0004252|GO:0006508
Lja4g2401 700 Gene3D Peptidase S8/S53 domain 126 335 IPR036852 GO:0004252|GO:0006508
Lja4g2401 700 CDD PA_subtilisin_like 360 411 - -
Lja4g2401 700 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 4 97 IPR037045 -
Lja4g2401 700 Gene3D - 566 693 - -
Lja4g2401 700 Pfam Fibronectin type-III domain 595 690 IPR041469 -
Lja4g2401 700 ProSitePatterns Serine proteases, subtilase family, serine active site. 480 490 IPR023828 -
Lja4g2401 700 Pfam Peptidase inhibitor I9 12 96 IPR010259 -
Lja4g2401 700 ProSiteProfiles Serine proteases, subtilase domain profile. 101 549 - -
Lja4g2401 700 Pfam Subtilase family 124 541 IPR000209 GO:0006508|GO:0008236
Lja4g2401 700 Gene3D - 336 353 - -
Lja4g2401 700 PANTHER SUBTILISIN-LIKE PROTEASE SBT5.4 9 353 - -
Lja4g2401 700 PANTHER SUBTILISIN-LIKE PROTEASE SBT5.4 359 692 - -
Lja4g2401 700 CDD Peptidases_S8_3 94 516 IPR034197 -
Lja4g2401 700 SUPERFAMILY Subtilisin-like 97 553 IPR036852 GO:0004252|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2401 Lja-Chr4 26902198 26907575 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2401 48 690 Subtilisin-like Serine Gene Family AT4G34980 41.864 8.50e-171 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2401 - - lja:Lj4g3v1388200.1 1331.62