Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2399 ATGGCCACCACCACCACCAGTCTTACCGGCGGAGCTGGCGGAGACGACCGTGTCCTCGCGGCGGCTCAACAGATCCTCAAGAGCCTCAAAACCCCCAAGGAGGATCGCGACGACATGCTGTTAATCTTCTCCACCTTCGATAACCGCCTCTCCGGCATCTCCGACCTCATCAACAACGCCGATGACTCCAAATCCTCCACCGAAGAAGAGCTTGACCGCTTCGACGCCGCCGAGAAGGTCATCCTCTCCGACGCTTCTCTCTCCGGCGAGCCTTCGCATCAATCGACGTCGCTGTTTGATCCGCCGAATGATCCCGTTGAGTATTTCACCGCTGTTGATGAGATCATCCAGTGGATGGAGCATTTCTCGATCTCCTCCGCCGGAGAGACCGTCCAGGCCGTAGTTGACCGCGCCGAGAACGCGATCCAGCTCGCTATGTCGAGGCTTGAGGACGAGCTTCGTCACGTGCTGATCTGCAACACCGTCCCTCCCGATGCTGTTAGCCGATGCGGCGGCTCGACCCGGAGATTCTCCACCTCGTTCGGCTCGCACGATGGTCCGATCTATGAGAATCTTGAGAGCTTCGGCGAGGGCAGTGATCGTGGATGTCACCGGTTTAATCCGAGCCTTGGGGATGATTTGTTTGTTGATTTGGTGCGTCCTGAGGCGATTCCGAACCTCAAGGACATCATCGATCGCATGGTTAGGTCTGGTTATGAGAGGGAGTGTCTTCAGGTATATAGCGGTGTTCGTCGTGATGCTTTGGATGAGTGTTTGATTATTCTTGGCGTTGAGAAGCTGAGTATTGAAGAGGTGCAGAAGATTGATTGGAAGAGTTTGGATGAGAAGATGAAGAATTGGGTGCATGCGGTTAAGGTGGTTGTTGGGGTTTTGTTGAGTGGGGAGAAGAGGCTGTGTGAGAGTTTGTTTGGTGAATTGGAGGAGTTGAAGGAGGTAGGTTTCAATGAGATTGCTAAAGGGTGTATTATGCAGTTGTTCAATTTCGCAGAGGCCATTGCCATTTGTAAGAGGTCGCCGGAGAAGTTGTTCAGGATATTGGATATGTATGAGGCTTGGAGTGATGCTTTGCCTGATTTGGAGGATATGGTTTCGGTTGTGTATGTGATCAATGAGGCCAAGGTGGTGCTGAAGGGGCTTGGTGAGGCAGCCAAAGGGACATTTACTGAGTTTGAGAATTGTATTCGGAATGAGACTTCTAAAAAACCAGTACTCACTGGGGATGTTCATCCTCTGCTTCGATATGTCATGAATTACCTGAAGTTGCTTGTGGATTATGGTGCCGCGATGGATTCACTTTTGGAAATCAGTGAAGAGGATCTTTACCGTTTTCAAAATGATTTGGGTGGTGATGGTTCCCAGTTAGAGACCATGTCCCCGTTAGGGCGTCAAGTACTGTTGTTGATGTCTGAGCTTGAGTACAATCTTGAGGAGAAGTCTAAACTCTATGAGGACGCCGCATTACAGCAGGTGTTTTTGATGAACAATCTATATTACCTGGTGCGGAAAGTGAAGGACTCGGATCTTAGGACTGTGTTGGGTGATGATTGGATTCGTAAGCGCCGCGGTCAGATAAGGCAGTATGCAACAGGCTACCTCAGAGCCTCTTGGAGCAAGGCCTTGTCTTGTTTGAAGGATGAAGGGATTGGAGGGAGCTCTAGTAATGCATCAAAGGTGGCTTTGAAGGAGAGGTTCAAGAGTTTCAATGCATGTTTTGAAGAAATATACAGGGTTCAGACTGCTTGGAAGGTACCGGATGAACAGCTTCGTGAGGAGATGCGAATATCTATATCAGAGAAGGTGATTCCTGCATACCGCTCGTTTGTGGGGAGGTTTAAGAGTCAGCTAGAGGGAAGGCATTCGGGGAAATACATTAAGTATACACCAGAGGATCTAGAGACCTATTTATTAGATTTATTTGAAGGATCCCCTGCTGTGTTGCATCACATAAGGAGAAAGAGTACATAG 1986 0.494 MATTTTSLTGGAGGDDRVLAAAQQILKSLKTPKEDRDDMLLIFSTFDNRLSGISDLINNADDSKSSTEEELDRFDAAEKVILSDASLSGEPSHQSTSLFDPPNDPVEYFTAVDEIIQWMEHFSISSAGETVQAVVDRAENAIQLAMSRLEDELRHVLICNTVPPDAVSRCGGSTRRFSTSFGSHDGPIYENLESFGEGSDRGCHRFNPSLGDDLFVDLVRPEAIPNLKDIIDRMVRSGYERECLQVYSGVRRDALDECLIILGVEKLSIEEVQKIDWKSLDEKMKNWVHAVKVVVGVLLSGEKRLCESLFGELEELKEVGFNEIAKGCIMQLFNFAEAIAICKRSPEKLFRILDMYEAWSDALPDLEDMVSVVYVINEAKVVLKGLGEAAKGTFTEFENCIRNETSKKPVLTGDVHPLLRYVMNYLKLLVDYGAAMDSLLEISEEDLYRFQNDLGGDGSQLETMSPLGRQVLLLMSELEYNLEEKSKLYEDAALQQVFLMNNLYYLVRKVKDSDLRTVLGDDWIRKRRGQIRQYATGYLRASWSKALSCLKDEGIGGSSSNASKVALKERFKSFNACFEEIYRVQTAWKVPDEQLREEMRISISEKVIPAYRSFVGRFKSQLEGRHSGKYIKYTPEDLETYLLDLFEGSPAVLHHIRRKST* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2399 661 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 58 660 - -
Lja4g2399 661 Gene3D Exocyst complex component Exo70 91 653 - -
Lja4g2399 661 PANTHER EXOCYST COMPLEX PROTEIN EXO70 58 660 IPR004140 GO:0000145|GO:0006887
Lja4g2399 661 SUPERFAMILY Cullin repeat-like 102 647 IPR016159 -
Lja4g2399 661 Coils Coil 475 495 - -
Lja4g2399 661 Pfam Exo70 exocyst complex subunit 285 643 IPR046364 GO:0000145|GO:0005546|GO:0006887
Lja4g2399 661 Coils Coil 135 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2399 Lja-Chr4 26872228 26874893 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2399 16 660 EXO70 exocyst subunit family AT5G50380 58.136 0.0 742
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2399 K07195 - lja:Lj0g3v0291869.1 1209.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2399 4 26872228 26874893 Lja4g2399 4 26872228 26874893 ECH
Lja1g4363 1 56339671 56344937 Lja4g2399 4 26872228 26874893 PCT