Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2394 ATGGAGAATGCAGAGGCGAAGTCCAGAGCAGACACGACGGCAATGGACGACGAAATGGAAGCTCTCTCCGGCGCGCACTTCTCCGGTTGGCATCCTTCAACACCGTCGTCTTCTTCTCCAACGCCATCACCCTCACTTTCCCATCCACCCTTCGTCATCGGTGTCTCTGGAGGTACGGCATCGGGGAAAACCACAGTTTGTGATATGATCATTCAACAACTGCAAGATCACAGAGTTGTGCTCGTCAGCCAGGATTCGTTCTATCGTGGTTTAACAAATGAAGAGTTGAAACGAGGTCATGAGTATAATTTTGATCATCCTGATGCATTTGATACGGAGCAGCTTGTAGAAACACTCAGCCAGCTCAAATCTGGACAGTCAGTTCAGGTTCCAATATATGATTTTAAGCTCCACCAGAGATCTTCTGACACTTTCCGACAGGTCAATGCATCTGAAGTAATCATCCTAGAGGGTATATTGGTTTTTCATGAACAACGTGTCCGCAACATGATGGATATGAAGATATTTGTTGATGCAGATCCTGATGTAAGGCTTGCTCGCAGAATACGACGTGATACTGTTGATAGGGGTAGAGATGTACTCTCAGTACTGGAACAGTATGCAAAATTTGTCAAGCCTGCCTTCGATGACTTTATTCTTCCATCCAAAAAGTATGCTGATGTCATCATACCTCGTGGGGGAGACAATCATGTAGCAATTGACCTGATTGTTCAACATATCCGTACTAAGCTTGGCCAACATAACCTCTGTAAGATATATCCAAATTTGAATGTGATACAGTCTACTTTCCAGGCTAGAGGCATGCACACTCTAATTCGTGACAAGGAAATATCAAAACATGACTTTGTTTTTTATTCAAATCGGCTAATTCGTTTGGTAGTGGAACATGGTCTTGGTTACTTGCCATTCACAGAGAAACAAGTTATCACACCTACAGGGTCAATTTATATTGGAGTTGATTTTTGTAAGAAATTGTGCGGAGTATCTGTTATTCGAAGTGGCGAAAGCATGGAAAATGCTTTGCGTGAATGCTGTAAAGGAATCAAAATAGGAAAAATTCTCATCCACCGTGAAGGTGATGAAACCCAGCTTATTTATGAGAAGCTTCCGAAAGATATTGCAGAGAGACATGTTCTTCTCATGGATCCAGTACTTGGTACAGGTAACACTGCCAGTCAAGCAATCGAGCTTCTTATAAAGAAGGGATGTCCAGAGTCCCGTATAATATTCCTCAACCTCATCTCTGCTCCTGAGGGAATACATTGTGTATGTAAACGTTTTCCGCAGTTGAAAATTGTCACTTCAGAGATTGAAGTAGGACTGAATGACCAGTTTCGTGTCATGCCTGGGCTAGGAGAATTCGGTGACCGTTATTTTGGGACGGATGACTCCTAG 1416 0.4308 MENAEAKSRADTTAMDDEMEALSGAHFSGWHPSTPSSSSPTPSPSLSHPPFVIGVSGGTASGKTTVCDMIIQQLQDHRVVLVSQDSFYRGLTNEELKRGHEYNFDHPDAFDTEQLVETLSQLKSGQSVQVPIYDFKLHQRSSDTFRQVNASEVIILEGILVFHEQRVRNMMDMKIFVDADPDVRLARRIRRDTVDRGRDVLSVLEQYAKFVKPAFDDFILPSKKYADVIIPRGGDNHVAIDLIVQHIRTKLGQHNLCKIYPNLNVIQSTFQARGMHTLIRDKEISKHDFVFYSNRLIRLVVEHGLGYLPFTEKQVITPTGSIYIGVDFCKKLCGVSVIRSGESMENALRECCKGIKIGKILIHREGDETQLIYEKLPKDIAERHVLLMDPVLGTGNTASQAIELLIKKGCPESRIIFLNLISAPEGIHCVCKRFPQLKIVTSEIEVGLNDQFRVMPGLGEFGDRYFGTDDS* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2394 471 PRINTS Uridine kinase signature 125 140 - -
Lja4g2394 471 PRINTS Uridine kinase signature 196 207 - -
Lja4g2394 471 PRINTS Uridine kinase signature 50 67 - -
Lja4g2394 471 PRINTS Uridine kinase signature 80 91 - -
Lja4g2394 471 PRINTS Uridine kinase signature 218 231 - -
Lja4g2394 471 PRINTS Uridine kinase signature 182 192 - -
Lja4g2394 471 PANTHER URIDINE KINASE 30 467 - -
Lja4g2394 471 MobiDBLite consensus disorder prediction 1 16 - -
Lja4g2394 471 CDD UMPK 52 250 IPR000764 -
Lja4g2394 471 Pfam Phosphoribulokinase / Uridine kinase family 52 238 IPR006083 GO:0005524|GO:0016301
Lja4g2394 471 Gene3D - 47 253 IPR027417 -
Lja4g2394 471 SUPERFAMILY PRTase-like 253 469 IPR029057 -
Lja4g2394 471 CDD PRTases_typeI 323 441 IPR000836 -
Lja4g2394 471 Gene3D - 254 468 IPR029057 -
Lja4g2394 471 ProSiteProfiles UvrC family, homology region profile. 138 239 IPR001162 GO:0009381
Lja4g2394 471 PANTHER URIDINE KINASE 30 467 - -
Lja4g2394 471 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 243 IPR027417 -
Lja4g2394 471 TIGRFAM udk: uridine kinase 51 250 IPR000764 -
Lja4g2394 471 MobiDBLite consensus disorder prediction 1 54 - -
Lja4g2394 471 Pfam Uracil phosphoribosyltransferase 268 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2394 Lja-Chr4 26814464 26819953 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2394 11 470 PRT Gene Family AT3G27190 76.875 0.0 753
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2394 K00876 - gmx:100816209 790.801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2394 4 26814464 26819953 Lja4g2394 4 26814464 26819953 ECH