Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2388 ATGGCAGAGGAAGGAGAGGCACTGATCATGTGCAGTGACAAGAGCATGAGAATTGGGATCACGATGTTGGACATGGACACAGGTGAAAACCTACTTCACATACCATCTTGTGCTTCACCACCGTTCGGATTGTTGTGCTTAAGAAACCAATTCCTCCCTCAACCACCACTTGTGAATTACACAGTGGAGCCCATTGGGCCACTTTCTAGCACAAAAGATGGCATATATCTTGTGGGAGGAGCTTTGTCTGGAAATGCTTATATTTGGAATGTAACTAGTGGAAAATTACTGAAGACTTGGTGTGCTCATAGTAAATCTATAAACCACACTCTGTTTTCAGATGACAATTCTTTTCTTATTTCTAGTTCAGAAGATGGTATGATTTGTGTTTGGTTAATGATTAGTTTGTTAGATGATGAAGAAATAGGAAGATCCACTTCTTTATTACATTGCTTGTCAGGGCACACATCTTCTATAACAGGTCTTTTAACTACACCTTACAATTGCTCCTCAATTTTAATATCAAGTTCCCTTGATGGAACATGCAAGGTTTGGGACTTTGTCACAGGAAGCGTTATGCAAACTCAAGTTTATCATGTGGCAATCACTTCCAGTGCTCTTCACCTAGGAGAAAGTCTCTTATTTTATGGAACACAAAATGGAACGATTATTGTCCACAAGCTTGGTGTTAGTCTAGAAGAAAGCCCTTCTATTATTACAACAAGCTATCCACCTAAGTTGAATGGACACAATGGAGCCATTACTTCCTTGACCACTAGTCAGACATGCCTAATATCAGCCTCTGAAGATTGCGTGATATGCATTTGGAATGTGATCAATGGGGAAATCATTCGAAGATTCAATCACCAAAAAGGGAAAATAACTAATCTCGTGGTAGTTCAACGACTCTCGGTGCTTTCTACATCAAAACATAAGAGAGTCTCCAATCAATATGTTGTTTCTCTACTTGACAAGTTTCCTCAGTCGGTCAACTCCTCCAGTGGAAATACCACTCCTCTTTCACTACGTCGTCTGCACAATGAAAAACAAACTTGCACTGATTTACAAAGTACCGGATTATTGAGACAGAACATGTCTGATTCACAGAAAGCACAAATGCGCATGTCCATGGACATGCAAATGAAAATGGAAACAAGTATAAGGAATCTTTTATGGGCAACCGAGATGACAAAGCATGTCATGGCGATGAACAGTCAGTTGCAGTTACAACTTCTGAATTTGATGCAACAAAGATTGATTTATCCAAATATAATCCACTCTAAGAAAACTAGTAGAAAGAAGCCCAAAATTCAGAGTCTTCTACATGAAGAGGAAAATCATAAGCCTTAG 1350 0.3926 MAEEGEALIMCSDKSMRIGITMLDMDTGENLLHIPSCASPPFGLLCLRNQFLPQPPLVNYTVEPIGPLSSTKDGIYLVGGALSGNAYIWNVTSGKLLKTWCAHSKSINHTLFSDDNSFLISSSEDGMICVWLMISLLDDEEIGRSTSLLHCLSGHTSSITGLLTTPYNCSSILISSSLDGTCKVWDFVTGSVMQTQVYHVAITSSALHLGESLLFYGTQNGTIIVHKLGVSLEESPSIITTSYPPKLNGHNGAITSLTTSQTCLISASEDCVICIWNVINGEIIRRFNHQKGKITNLVVVQRLSVLSTSKHKRVSNQYVVSLLDKFPQSVNSSSGNTTPLSLRRLHNEKQTCTDLQSTGLLRQNMSDSQKAQMRMSMDMQMKMETSIRNLLWATEMTKHVMAMNSQLQLQLLNLMQQRLIYPNIIHSKKTSRKKPKIQSLLHEEENHKP* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2388 449 ProSiteProfiles Trp-Asp (WD) repeats profile. 247 286 IPR001680 GO:0005515
Lja4g2388 449 Pfam WD domain, G-beta repeat 247 277 IPR001680 GO:0005515
Lja4g2388 449 Pfam WD domain, G-beta repeat 94 131 IPR001680 GO:0005515
Lja4g2388 449 Pfam WD domain, G-beta repeat 148 186 IPR001680 GO:0005515
Lja4g2388 449 PANTHER WD-REPEAT PROTEIN 18 5 439 IPR045227 -
Lja4g2388 449 ProSiteProfiles Trp-Asp (WD) repeats profile. 100 131 IPR001680 GO:0005515
Lja4g2388 449 Gene3D - 241 370 IPR015943 GO:0005515
Lja4g2388 449 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 100 131 - -
Lja4g2388 449 PANTHER PROTEIN ROOT INITIATION DEFECTIVE 3-LIKE 5 439 - -
Lja4g2388 449 ProSiteProfiles Trp-Asp (WD) repeats profile. 152 195 IPR001680 GO:0005515
Lja4g2388 449 ProSitePatterns Trp-Asp (WD) repeats signature. 264 278 IPR019775 -
Lja4g2388 449 PRINTS G protein beta WD-40 repeat signature 119 133 IPR020472 -
Lja4g2388 449 PRINTS G protein beta WD-40 repeat signature 264 278 IPR020472 -
Lja4g2388 449 PRINTS G protein beta WD-40 repeat signature 173 187 IPR020472 -
Lja4g2388 449 MobiDBLite consensus disorder prediction 426 449 - -
Lja4g2388 449 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 152 186 - -
Lja4g2388 449 SUPERFAMILY WD40 repeat-like 68 312 IPR036322 GO:0005515
Lja4g2388 449 Gene3D - 9 240 IPR015943 GO:0005515
Lja4g2388 449 SMART WD40_4 145 186 IPR001680 GO:0005515
Lja4g2388 449 SMART WD40_4 189 227 IPR001680 GO:0005515
Lja4g2388 449 SMART WD40_4 240 277 IPR001680 GO:0005515
Lja4g2388 449 SMART WD40_4 93 132 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2388 Lja-Chr4 26746247 26755643 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2388 80 278 U-box Gene Family AT2G33340 23.415 1.77e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2388 K14829 - gmx:102662801 529.25