Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2386 ATGGCGGCAGGGCGAAAAAGTGTTCTGCGAAGGAGGGAATCTTACCAAGTTAGTTCCGTCAAGGAATTCGATTCGAATAAGAATGTCGAATTGGGTGGTGGAAAAGAGGAGCGTGAGGAAGGTGAGATCTTTGTTCAACACAGGGATGGGGGTGAAGTTTTACCCCCTCCGGAGAAGAGGAGGAAGATTTCTCCGATTGTGTGGGACATGGCGGAGAAGGAAGCAGGAAGCAATGAGGGTGTTTTGAGTGCATCTTCACCAAATTCCTTGAACCAGGATGTGGATGAAGGAAGTGGTATGGAAGGATGGAACATCAAAATGTCAAGATGGGCTTGTGATGATGGACTTTCACCGATGGGCGTTGATCGGAAACATAAGAAAGGTCAAGGAAGATCGGGCCCTGAAATTGATGAATTCCAAAGAGGAAGTTCAGAGAGCACAATCACTAGATCAACAGGAAGCTGTGGAAGAGATCATAGTGATGGAGATCGTGATTTGGGGCATTCTCCTGCTGATACAGACTCTGAAAAGGGGTTCCTTGATGATGACTCCATGGACGATGATGTTGAGGAACGAAGTGACGTAAGTGATTCTCCGTCTGATTCTCATGAAGATGGTGGTTTAATACATGGGCAGAGAAATATTAACATGCTTCAGAGTTGCAGGAGTGTGTGTGAGTTTGAGATGATTAAGAAAATCAATGAAGGTACTTATGGTGTTGTCTATAAAGCTAGGGATAAGAAGACTGGAGAAATAGTAGCATTGAAGAAGGTGAAGATGAACATTCACAGGGATGGCTTTCCAATGTCTTCCTTGAGGGAAATTAATATTCTCTTGTCTTGCAACCATCCCTCCATTGTAGATGTTAAAGAAGTAGTTGTGGATGATTATGATGGTACTTTTATGGTAATGGAGCACATGGAGTATGATCTCAAAGGAGTCATGGAGGTAAGGAAGCAACCTTTTAGTATAGGTGAAATAAAATCCTTGATGCAGCAACTTCTGGAAGGTGTCAAGTATCTCCATGATAATTGGGTTCTCCATAGGGATTTGAAGACATCAAACATTCTGCTGAACTGCGAAGGGAGGCTGAAAATTTGTGACATGGGGTTGTCGAGGCAGTATGGAAGCCCACTGAAGCCATATACTCCTGTTGTGGTTACACTATGGTATAGAGCTCCTGAACTTCTGTTAGGTGCCAAAGAATACTCGACAGCAATTGACATGTGGTCAGTGGGTTGTATAATGGCTGAATTAGTTGCTAAGGAGGCTCTATTCAAGGGTAAAACTGAAATTGAACAACTTGATAAGATTTTTCGAACTATGGGAACACCAAATGAGAAAAGTTGGCCAGGATTATCCAAATTACCTGGCTATAAAGCAAATTTTGTTAAGCAACCATATAATTTGCTAAGGAAGAAATTTCCAGCAAAATCTTTCACTGGTTCACCAGTTTTATCTGAATTGGGATTTGACCTGTTGTCGAAGCTTCTAACTTACAACCCTGAAGAGAGGATAACTGCAGAAGAAGCACTTCTTCATGATTGGTTCCGTGAAGCCCCACTTCCCAAAGCTGATTTCAAGATTATTTTTCCTTCTTGGAACTGCTAG 1611 0.4233 MAAGRKSVLRRRESYQVSSVKEFDSNKNVELGGGKEEREEGEIFVQHRDGGEVLPPPEKRRKISPIVWDMAEKEAGSNEGVLSASSPNSLNQDVDEGSGMEGWNIKMSRWACDDGLSPMGVDRKHKKGQGRSGPEIDEFQRGSSESTITRSTGSCGRDHSDGDRDLGHSPADTDSEKGFLDDDSMDDDVEERSDVSDSPSDSHEDGGLIHGQRNINMLQSCRSVCEFEMIKKINEGTYGVVYKARDKKTGEIVALKKVKMNIHRDGFPMSSLREINILLSCNHPSIVDVKEVVVDDYDGTFMVMEHMEYDLKGVMEVRKQPFSIGEIKSLMQQLLEGVKYLHDNWVLHRDLKTSNILLNCEGRLKICDMGLSRQYGSPLKPYTPVVVTLWYRAPELLLGAKEYSTAIDMWSVGCIMAELVAKEALFKGKTEIEQLDKIFRTMGTPNEKSWPGLSKLPGYKANFVKQPYNLLRKKFPAKSFTGSPVLSELGFDLLSKLLTYNPEERITAEEALLHDWFREAPLPKADFKIIFPSWNC* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2386 536 Gene3D Transferase(Phosphotransferase) domain 1 309 527 - -
Lja4g2386 536 PANTHER CELL DIVISION PROTEIN KINASE 81 534 - -
Lja4g2386 536 PANTHER CYCLIN-DEPENDENT KINASE 81 534 - -
Lja4g2386 536 SMART serkin_6 227 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2386 536 MobiDBLite consensus disorder prediction 139 155 - -
Lja4g2386 536 MobiDBLite consensus disorder prediction 179 194 - -
Lja4g2386 536 SUPERFAMILY Protein kinase-like (PK-like) 221 523 IPR011009 -
Lja4g2386 536 MobiDBLite consensus disorder prediction 28 59 - -
Lja4g2386 536 CDD STKc_CDC2L1 221 517 IPR045267 GO:0004674|GO:0005524|GO:0006468
Lja4g2386 536 MobiDBLite consensus disorder prediction 79 95 - -
Lja4g2386 536 Gene3D Phosphorylase Kinase; domain 1 210 308 - -
Lja4g2386 536 MobiDBLite consensus disorder prediction 118 134 - -
Lja4g2386 536 MobiDBLite consensus disorder prediction 26 59 - -
Lja4g2386 536 ProSitePatterns Serine/Threonine protein kinases active-site signature. 346 358 IPR008271 GO:0004672|GO:0006468
Lja4g2386 536 ProSiteProfiles Protein kinase domain profile. 227 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2386 536 Pfam Protein kinase domain 227 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2386 536 MobiDBLite consensus disorder prediction 74 100 - -
Lja4g2386 536 MobiDBLite consensus disorder prediction 156 178 - -
Lja4g2386 536 MobiDBLite consensus disorder prediction 112 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2386 Lja-Chr4 26730781 26734994 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2386 222 523 Core Cell Cycle Gene Families AT5G10270 44.969 2.26e-81 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Lja4g2386 Pkinase 8e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2386 K08818 - gmx:100788840 721.465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2386 4 26730781 26734994 Lja4g2386 4 26730781 26734994 ECH