Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2385 ATGCGACCACGCACCACCGAACCTTCCTCTTCTTCCTCGGTTCCGGTTCCTGTTCCTGTTCCTGTTCCTGTTCCTCCTAGTCCTAGGTCGAAGAATGAGCTGCTGAAGGAGAAGCTTAATCAAGATGCTGAGGATCTCAAAGTGAAAAGGAATGAGCTTGCTTTGGTCCGACGCGGAATAGAATGTGCTGGAATCCAAAACTTGCGTATTAAGGGTTTGCTACTTACAAGCGAAAGTGCAGACAAGGTGGTTGGTTGGGCTTTAACCCATCACGCCTTGCATTCAAACCTTGTATTGTCCGCTGAGAGTATCCTACATGGACTTCAGTTGTTGAACTCTAACAATAATGAATCAAAGAAGGTTTTTAAGGACCTTGTATTTGAAGACGAATATGAGAAGAGGCTCCTGGATAATGTCATCACACCTAGTGACATTGGTGTTAGTTTTAATGATATTGGGGCTCTTGAAGATGTGAAGGATACACTGAAGAAATTGGTGATGCTCCCCGTACAAAGGCCTGAGCTCTACACCAAGGGGAAATTAACCAAGCCGTGCAGAGGTATCCTTTTATTTGGTCCCCCGGGAACAGGTAAAACAATGCTTGCAAAGGCAATTGCTACTGAAGCTGGGGCAAACTTTATCAACATTTCTCTGTCTAGCATTACTTCTAAGTTTAATGGCGAGGAGGAGAAATTTGTGAAAGCTATGTTCTCTGTGGTGAGGAAAATTTCTCCTACTGTTATATTTGTCGATGAAATGTGTGCTGCTGTTGATCTTTTCTGCTGTGGTTCTGTTGCTGTTACTTTTGATGCTGTTAATTCGGTGCCGGCTTGCGTTGTGGGAATGAGTTGA 852 0.4401 MRPRTTEPSSSSSVPVPVPVPVPVPPSPRSKNELLKEKLNQDAEDLKVKRNELALVRRGIECAGIQNLRIKGLLLTSESADKVVGWALTHHALHSNLVLSAESILHGLQLLNSNNNESKKVFKDLVFEDEYEKRLLDNVITPSDIGVSFNDIGALEDVKDTLKKLVMLPVQRPELYTKGKLTKPCRGILLFGPPGTGKTMLAKAIATEAGANFINISLSSITSKFNGEEEKFVKAMFSVVRKISPTVIFVDEMCAAVDLFCCGSVAVTFDAVNSVPACVVGMS* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2385 283 CDD AAA 186 253 - -
Lja4g2385 283 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN-RELATED 35 253 - -
Lja4g2385 283 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 259 IPR027417 -
Lja4g2385 283 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 35 253 - -
Lja4g2385 283 Gene3D - 146 253 IPR027417 -
Lja4g2385 283 MobiDBLite consensus disorder prediction 1 32 - -
Lja4g2385 283 Pfam ATPase family associated with various cellular activities (AAA) 188 254 IPR003959 GO:0005524|GO:0016887
Lja4g2385 283 MobiDBLite consensus disorder prediction 14 28 - -
Lja4g2385 283 Coils Coil 32 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2385 Lja-Chr4 26718024 26721627 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2385 183 255 Calmodulin-binding Proteins AT3G56690 39.726 1.07e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2385 - - jre:108994069 282.337