Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2380 ATGCTTCCAATAAAACCCTTAGACAATGGGATGCACTTGAACAAATTCTTGGAGTGGAAAGTAAATGAAAGGGTTCAAAATTGGGTTAAAAAAACATGCTTTGGTTCATTTCTAGGGATGAAGGAATTCATAGACAATGGTAATTTTCAACAAAGGATGAACTTTATTACTGCTCTTGTTCAGTATTATGATGAAAAACAACACTGTTTTGAGCTTGGCAGTGAAGAAAATAAATTTTTTCTAGATTTTGGTCTTCAAGACATTTTGCATATATCTGGACTTCCGATCAATGGGAATCAGGTCACTTGGCAACCATATATAGATAGACCAGCACAATGTCATACCTATCAGCTAGACATGATTTATGCATATGTGCCATGCATACATTTTGCTGACATAGCTTTAAATCGGGCTGATTTGTGTTATGAACAACTGGGATTGAGGATGGAGGACCTTCGTATGCCTTTCAAGCACAGAAATGTCGATTGGAGAGTGCACAAGGAAAAATATGGATACCGGGAGTACAATAAAATATGGACGGACCGGAACTCATATTTAGTGATTCCACAGCAAGCCTCTCCTTCTCCCCAGCAAAGCTCTTCTCACCATTCTCAAGGCAATGAGGATGAAGACCGGCAAAGCTCTCGTCGCCATCCAACTCCAACTCAAACTCCAACTCGAGTGCAACAGCGTGTTGCCTATGAGGGTAGAGTGTATATATGTCGCAGAGGGAGTAACACGGGAAAATTGAAAACCAAAGGAGATGTGAAGATTGACGTTGAGCACTCCCTATATTTGCTAAGAGAGCTTCTTCCACATATAAAACAGTTGAGTGAGGAAGAAATGACTGAGAAAAAGGAAGAGGCTAGCAGAGAAGTTAAATTTGATCAGGGTATATGTGTTCCAGTAGAATTTTGTTTACTTAACCCCTTTTTTTGTTGTGACAACTGCAAGACGTCAATATTTGCCCTCCACAAACACTGTCAAACATGCAATTGTGACTTTTGTCTCGCCTGTTCTCGTGACTTTCATGATGCACAGCTTCGAGGTGGAGGTGGTGCTGATCCAATTGAGTCACGTGTTACTGCCAAGCCTGGGGTTCACAAACGACCAAGTTCTGATCCAATTGAGTCACGTGTTACTGCCAAGCCTGGGGTTCACAAACGACCAAGTTCTGATCCAATTGAGTCACGTGTTACTGTCAAGCATAGGGTTCACAAACGGCCAAGAACTGATAGGCATGAGGATAGTGATGACATGGTTTGGTGTGATGGGTCTTTTGAACTGAGAAGCTTCTATCCTCCGAGTCACATTGCTGATTTGGTAGATGAAGCAGACAAACTTTTACACAAACACAATCATCACAAACCTATGTATGCAGATGAAACTCATAAGAACATGCATTCATGTTTGAATGGCAAGGCAGCATCTCGTGAAGACTCAAGCGAGAACAATATATATTGCCCGGAGGCTGAAAATGTAGTAATAAATGTACATCCTGAGGATTTACTACATTTTCAATGGCACTGGAGAAAAGGGGAACCTGTAATTGTTAGGAACCTGCTTAGAGGTACATCTAGTTCATTATGGGAACCTTCAAGCATGAGCCGTGCAATCTGTGAGACGCACGAGACTGTGAAGGTCATTGATTGCTCAACTTTGCTCCAGAAAACTGTTAAAACCGACAAGTTCTTTACTTGGTACATGAAGCGTTCAAGTAAAAAGTCTCACATGTGGAAATTGAAAGATTGGCCTCCTTCTAAATCCTTTAAGGAATGTTTACCTGATCATTTTGAGGAGTTCATATCTTACTTATCGTATAAAGAATACACGCATCCAAGTGGTTCTCTAAACCGTGCCTTGAAGTTGCCTGATGGTTGTCTGAAGCCAGACTTGGGGCCAAAAGCATACATTGCTTATGGATTTGCAAAGGAGCTTAGGTGTGGTGATTCTGTGACTATGCTCCATTGTGACATGTCTGATGCAGTAAATGTGCTGACTCATGTTGCCGAGGATGTTACTGCCATTGAGAAATTGATGCCAAAGCTTAAAGAAGTTGAAAAAGAAACAGTGGAGCAAGGAGATAGTTTGTTGGATGCAGTGGATTCTTTGGATGGTGCTCTCTGGGATATTTTCCGAAGAAAGGACGTACCTAAGTTGGAGGAATATTTAAATAAGCATTTCGGAGAGTTTAGTCATGCTAACTACCTTCCTTTAGATAAGCCCTGGACCTTCACTCAGAAGCTAGGAGATGTTGTTTTCATTCCAGCTGGATGTCCTCATCAAGTCAGAAATCTGAAAGAAGTTGTAAAGACAACGAATACTAATGGGTAG 2334 0.4122 MLPIKPLDNGMHLNKFLEWKVNERVQNWVKKTCFGSFLGMKEFIDNGNFQQRMNFITALVQYYDEKQHCFELGSEENKFFLDFGLQDILHISGLPINGNQVTWQPYIDRPAQCHTYQLDMIYAYVPCIHFADIALNRADLCYEQLGLRMEDLRMPFKHRNVDWRVHKEKYGYREYNKIWTDRNSYLVIPQQASPSPQQSSSHHSQGNEDEDRQSSRRHPTPTQTPTRVQQRVAYEGRVYICRRGSNTGKLKTKGDVKIDVEHSLYLLRELLPHIKQLSEEEMTEKKEEASREVKFDQGICVPVEFCLLNPFFCCDNCKTSIFALHKHCQTCNCDFCLACSRDFHDAQLRGGGGADPIESRVTAKPGVHKRPSSDPIESRVTAKPGVHKRPSSDPIESRVTVKHRVHKRPRTDRHEDSDDMVWCDGSFELRSFYPPSHIADLVDEADKLLHKHNHHKPMYADETHKNMHSCLNGKAASREDSSENNIYCPEAENVVINVHPEDLLHFQWHWRKGEPVIVRNLLRGTSSSLWEPSSMSRAICETHETVKVIDCSTLLQKTVKTDKFFTWYMKRSSKKSHMWKLKDWPPSKSFKECLPDHFEEFISYLSYKEYTHPSGSLNRALKLPDGCLKPDLGPKAYIAYGFAKELRCGDSVTMLHCDMSDAVNVLTHVAEDVTAIEKLMPKLKEVEKETVEQGDSLLDAVDSLDGALWDIFRRKDVPKLEEYLNKHFGEFSHANYLPLDKPWTFTQKLGDVVFIPAGCPHQVRNLKEVVKTTNTNG* 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2380 777 MobiDBLite consensus disorder prediction 190 229 - -
Lja4g2380 777 SMART cupin_9 594 774 IPR003347 -
Lja4g2380 777 ProSiteProfiles JmjC domain profile. 612 777 IPR003347 -
Lja4g2380 777 Pfam JmjC domain, hydroxylase 741 769 IPR003347 -
Lja4g2380 777 SUPERFAMILY Clavaminate synthase-like 501 766 - -
Lja4g2380 777 MobiDBLite consensus disorder prediction 350 415 - -
Lja4g2380 777 MobiDBLite consensus disorder prediction 362 400 - -
Lja4g2380 777 Gene3D Cupin 490 775 - -
Lja4g2380 777 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 247 773 IPR045109 GO:0032454|GO:0033169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2380 Lja-Chr4 26631198 26636244 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lja4g2380 JmjC 5.1e-06 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2380 K15601 - mnt:21406437 353.984