Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2370 ATGTTGCGCTACCATATACTTGATTCAACCCCCACTTTCCAAGACTCCCTCAAGGCACTCGAGGCTGACATTCAACATGCCAATCTGCTGGCTGCTTCTATTTCAAGGGGCAATGGAAGTGCTTGCCTTCAAATGAAGTTAGTTTACAACAAATTGGCACCCGTTTTTCTGTTTTTATATCAATGGATGGATTTCTCATGTTCATGTCTACTTCCAAGCCACTTCAATCTTTTCCGCGTAATTGTGTATAAGATTCACACCAATGGGAAGCCAAATACATATTCTTATGGAAGGAAAGCAACCATAAGGGAGTTCTATGGTGTTATATTACCTTCTCTTCAGCGTCTTCACGATGATTTAGTAGATACTAACATCATGAAAGAAAAAGATCGCAGCATCGAGGTGGTTATCGATAGGAGTGCGGATGATAGGAGGAAGCCTTTTGATTTGGACTCAGACAGAGAAAATGAGTGTGGTATCTGCTTAGAGTCTTGCACAAAAATGGTCTTACCTAATTGCTGCCATGCTATGTGTAAAAATTGTTACAGTGACTGGAACACAAGGTCAGAATCTTGTCCGTTTTGCCGGGGAAGTTTAAAGAGAGTTAACTCAGGTGATTTGTGGGTTCTAACAAGCAGTAGTGATGTGATTGATGCACAAACCGCGTACAGAGAAGATATTCTGTGCCTCTATCTCTTTGTAAATAACCTGCCAGAACATATTCCTGATGCTCTTTTCTTTATGTATTATGAGTACTTATTTTAA 765 0.4013 MLRYHILDSTPTFQDSLKALEADIQHANLLAASISRGNGSACLQMKLVYNKLAPVFLFLYQWMDFSCSCLLPSHFNLFRVIVYKIHTNGKPNTYSYGRKATIREFYGVILPSLQRLHDDLVDTNIMKEKDRSIEVVIDRSADDRRKPFDLDSDRENECGICLESCTKMVLPNCCHAMCKNCYSDWNTRSESCPFCRGSLKRVNSGDLWVLTSSSDVIDAQTAYREDILCLYLFVNNLPEHIPDALFFMYYEYLF* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2370 254 SUPERFAMILY RING/U-box 157 201 - -
Lja4g2370 254 ProSiteProfiles Zinc finger RING-type profile. 158 196 IPR001841 -
Lja4g2370 254 PANTHER RING FINGER PROTEIN 41, 151 9 254 - -
Lja4g2370 254 SMART ring_2 158 195 IPR001841 -
Lja4g2370 254 Pfam Ring finger domain 156 196 IPR001841 -
Lja4g2370 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 205 IPR013083 -
Lja4g2370 254 PANTHER OS01G0905700 PROTEIN 9 254 - -
Lja4g2370 254 ProSitePatterns Zinc finger RING-type signature. 173 182 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2370 Lja-Chr4 26527858 26530117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2370 149 203 RAD5 or RAD16-like Gene Family AT5G43530 43.860 3.64e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2370 - - jre:109018365 367.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2370 4 26527858 26530117 Lja4g2370 4 26527858 26530117 ECH