Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2366 ATGGAACCTTCTGAGTCTGATTCACCTGCTGCAGTTACCAATGGCGACAACAACCCACAACAACAACAACAACTGGGTTCTGAACCTTCTTCTCCCGTTGCTCATCCTCCACCGCCGTCAGATCTCAATCACGCCGCGGAGGAGGATGATGATGACGCACTTGGTGGAGAGTTTCAGAACAAGCTGGATTTGAAGGGTGAGGATGATGGGGGTGCTGAAACTGGTGAGAAAGCTTCCGATGATGGAGGGGTTTGTGATGCGGAATCTGTTAAGGGTGGTGAAGGGTTTGATGGAGATAGCAGGGGTTGGGATAACAGTAGTTGGGGTGAGAATGTGATTGAAGAGGTGGGTAGAGAGGCTTATGGGGGTGGAGATTTTGATGGTGATGATGGATTGGAGCAAAATGACGAGGTGGGTATTGAGGCATTTGGAGGGAGAGATTTTGATGTTGATGTTGATGTTGATGTTGATGGAGTGGAGCAAAATGAAGAGAAAACCAGTGGTGGGAGTGGGACTTCTAACTACCCTTTGAGGCCTGATGCTGAAGATTGTTCATTCTATATGAAAACTGGGAGTTGCAAGTTTGGATTCCATTGCAGGTTTAACCACCCCATTAGGAGGAGAACCCAGGCTGTTAAGGAGAAGGCAGGAGAAAGAGAAGAACCAACAGAAAGATCAAGCCTGACAGAGTGCAAGTATTATCTAAGGTCTGGGGGTTGTAAGTTTGGAAAAGCTTGCAAGTATAACCACACAAGAGGAAGCAGTTCAACAGCACCAAAACTTAACTTTATCGGCCTACCTATTCGTCTGGGAGAGAGAGAGTGCCCCTTTTACATGCGCACTGGCTCTTGTAAGTATGGAGCAAACTGCAGGTTTAATCATCCTGATCCTACAAGTGTTGGAGGATCTGATCCTCCCCCAGGGTATGGTAATGTGGGGTCATTTAAAGGTGCATCACCTTCTGTACCCTCGTGGTCTTCTTCAAAAACATTAAATGAGACTTCTTTTATGCCGATGATCCTTAAGCCAAGTCAAGGAGTTTCTCCCCAAAATTCTGACTGGAATGGATATCAGGCACCTGTCTACCTATCTGAGAGGAGTATGCATCCAACTTCTGCATATGTCATGAACCCAGCAATTGAAACAAACGCTTACATGCACCGTCAAAGGCAGATGCCAGTTGAAGAGTATCCAGAAAGGCCTGGTGAACCTGAATGCAGCTACTTCTTAAAAACTGGGGCTTGCAAATTTAAATCTAATTGTAAATTTCACCATCCAAGGAATCGAGTTGCAAGATTACCTCCATGCATCCTCAGTGACAAGGGCCTGCCTCTGAGACCTGACCAGAATGTCTGCTCGCATTACAGTCGTTATGGAATTTGCAAATTTGGACCAGCTTGTAGGTATGACCACCCAATAGACCCACTGCCCGTGATGATGCCTGGACTCGGCCTGCAATCCTACCCAAACTCAGCTGATGTTGAGATGGCTGGGTTGGGTGGAAGTGCAGGTGCAAGTGATGTGAGAATTCAGCAATCTGTGTAA 1545 0.4667 MEPSESDSPAAVTNGDNNPQQQQQLGSEPSSPVAHPPPPSDLNHAAEEDDDDALGGEFQNKLDLKGEDDGGAETGEKASDDGGVCDAESVKGGEGFDGDSRGWDNSSWGENVIEEVGREAYGGGDFDGDDGLEQNDEVGIEAFGGRDFDVDVDVDVDGVEQNEEKTSGGSGTSNYPLRPDAEDCSFYMKTGSCKFGFHCRFNHPIRRRTQAVKEKAGEREEPTERSSLTECKYYLRSGGCKFGKACKYNHTRGSSSTAPKLNFIGLPIRLGERECPFYMRTGSCKYGANCRFNHPDPTSVGGSDPPPGYGNVGSFKGASPSVPSWSSSKTLNETSFMPMILKPSQGVSPQNSDWNGYQAPVYLSERSMHPTSAYVMNPAIETNAYMHRQRQMPVEEYPERPGEPECSYFLKTGACKFKSNCKFHHPRNRVARLPPCILSDKGLPLRPDQNVCSHYSRYGICKFGPACRYDHPIDPLPVMMPGLGLQSYPNSADVEMAGLGGSAGASDVRIQQSV* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2366 514 MobiDBLite consensus disorder prediction 7 30 - -
Lja4g2366 514 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 21 514 - -
Lja4g2366 514 SUPERFAMILY CCCH zinc finger 405 429 IPR036855 GO:0046872
Lja4g2366 514 ProSiteProfiles Zinc finger C3H1-type profile. 446 474 IPR000571 GO:0046872
Lja4g2366 514 Gene3D - 152 216 - -
Lja4g2366 514 ProSiteProfiles Zinc finger C3H1-type profile. 269 297 IPR000571 GO:0046872
Lja4g2366 514 MobiDBLite consensus disorder prediction 1 134 - -
Lja4g2366 514 SUPERFAMILY CCCH zinc finger 270 296 IPR036855 GO:0046872
Lja4g2366 514 MobiDBLite consensus disorder prediction 55 84 - -
Lja4g2366 514 ProSiteProfiles Zinc finger C3H1-type profile. 400 428 IPR000571 GO:0046872
Lja4g2366 514 PANTHER PROTEIN PHOSPHATASE RELATED 21 514 - -
Lja4g2366 514 SMART c3hfinal6 269 296 IPR000571 GO:0046872
Lja4g2366 514 SMART c3hfinal6 225 252 IPR000571 GO:0046872
Lja4g2366 514 SMART c3hfinal6 446 473 IPR000571 GO:0046872
Lja4g2366 514 SMART c3hfinal6 400 427 IPR000571 GO:0046872
Lja4g2366 514 SMART c3hfinal6 178 205 IPR000571 GO:0046872
Lja4g2366 514 SUPERFAMILY CCCH zinc finger 228 253 IPR036855 GO:0046872
Lja4g2366 514 SUPERFAMILY CCCH zinc finger 179 206 IPR036855 GO:0046872
Lja4g2366 514 Gene3D - 397 477 - -
Lja4g2366 514 Gene3D - 219 303 - -
Lja4g2366 514 ProSiteProfiles Zinc finger C3H1-type profile. 178 206 IPR000571 GO:0046872
Lja4g2366 514 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 402 427 IPR000571 GO:0046872
Lja4g2366 514 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 182 204 IPR000571 GO:0046872
Lja4g2366 514 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 230 250 IPR000571 GO:0046872
Lja4g2366 514 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 449 472 IPR000571 GO:0046872
Lja4g2366 514 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 271 295 IPR000571 GO:0046872
Lja4g2366 514 SUPERFAMILY CCCH zinc finger 444 472 IPR036855 GO:0046872
Lja4g2366 514 ProSiteProfiles Zinc finger C3H1-type profile. 225 253 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2366 Lja-Chr4 26504797 26509350 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2366 392 497 C2H2 Transcription Factor Family AT3G02830 34.211 1.36e-17 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lja4g2366 zf-CCCH 1.1e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2366 - - lja:Lj4g3v1389250.2 1034.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5283 1 80724022 80731437 Lja4g2366 4 26504797 26509350 ECH
Lja4g2366 4 26504797 26509350 Lja4g2366 4 26504797 26509350 ECH
Lja4g2366 4 26504797 26509350 Lja1g5283 1 80724022 80731437 PCT