Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2365 ATGGCGGCGTGCTCGTCGGAGGAGGTTTTCCCGTGGCTGAAATCTCTCCCGGTGGCGCCGGAGTATCGTCCAACCGCGGCGGAGTTTCACGATCCGATCGGCTACATCTTCAAGATAGAGAAGGAAGCTTCCAAGTATGGAATCTGCAAAATCATCCCCCCTGTTTCCCCTTCCCCCAAGAAAACCGCAATTTCCAACCTCAACCGCTGTCAACCCCAGTTCACCACGCGCCAGCAGCAGATCGGGTTCTGCCCTCGCCGGCAACAACCGGTTCGCCGCCCGGTTTGGCACAGCGGCAACCAGTACTCGTTCCGTGAGTTCGAGTCAAAGGCGAAGACCTTCGAGAAGAGCTTCCTCAAGAAGGGGAAGAAGTCCACGCCGCTTTCGCCTCTCGAGGTTGAAACCCTCTACTGGAAAGCCACTGTGGATAAACCGTTTTCTGTTGAGTATGCGAACGACATGCCTGGGTCTGCGTTTTGCCCCATGAAGGAGAATGTTTATGGCGGCGGTGACGGTTATGTCACCGTCGGTGAGACTGCGTGGAATATGAGAGGGGTTTCGAGGGCGAATGGGTCGTTGTTGAGGTTTATGAAGGAGGAGATTCCTGGTGTTACTTCGCCTATGGTGTATCTGGCTATGATGTTTAGCTGGTTTGCTTGGCATGTTGAGGATCATGATTTGCATAGCTTGAATTATCTTCACATGGGTGCTCCTAAGACATGGTATGGGGTGCCCAAGGATGCTGCTGTTGCGTTTGAGGATGTTGTTAGAGTTCATGGCTATGGAGGAGAGATTAACCCTCTTGTTACTTTTTCTATTCTTGGCGAGAAAACTACAGTGATGTCCCCGGAAGTGTTCATTAGAGCTGGTGTTCCCTGCTGCAGGTTGGTTCAAAATGCTGGTGAATTTGTTGTGACATTCCCAAGAGCCTATCACACAGGATTTAGTCATGGTTTTAACTGTGGAGAGGCAGCTAACATTGCAACGCCTGAATGGTTGACGTTTGCTAAAGATGCAGCTATTCGGAGGGCTTCAATTAATTATCCTCCCATGGTTTCACATTTCCAATTACTTTATGACCTTGGCCTTGCTTTGTGTTCTAGAATTCCTGGACGCATTGCTGAACCACGGAGTTCTCGACTTAAAGATAAGAGAAAGGGTGCTGGAGAAACTGTAGTTAAAGAACTTTTTGTACAGGACGTGTTACAGAATAATGATCTGCTTCACATACTTGGCAGCGGATCGTCTATAGTACTTCTTCCTCATAGCTCTTCTGACTTTTCTGTCTGCTCAAAATTACGTGTTGGATCCCAACAACTAAAAGTGAAGTCTGAGCCTTTCCTCAATGTATGCAATTCCGAGGGAATGGGTTCATCAAAAGGTTTTATTTCTGGTGACCTGGTGTCCAATAAGAATCATGGTGTCAAAAATGTAAAAGGTTTTTATTCAGTAAAAGAAAAGTTTGCTTCCTTGTGCGAAAGGAACAGGGGTGAAGTGTGCCCTTCCAGTTCAAAAACACTGCAAAGAGACAGTGAAAAAGAAACTAGTCAAGGAGATGGGTTATCGGATCAGCGACTATTTTCATGTGTCACATGTGGAATATTAAGCTTTTCCTGTGTTGCCATTGTACAGCCTAAGGAACCAGCAGCTAGATACCTTATGTCAGCTGATTGTAGCTTCTTTAATGACTGGATCGAAGGTTCTGGAGTAACCAGCAATAAGTTTACTGTTGAAAATGAAGATGCAAATGTTCCCAAGCCGACTACTTATACAGGATGGACAAAACAGAATGCGAGATATGATTTATATGATGTTCCTGTTCAATCTGTTGAGCAGCTGACACAGATTGTTGATCAAAATCATAAGCAAGTTTTAAATACTGAAAGCAAAAAAGGCAATACAGCTCTTGCATTATTGGCTTCAGCATATGGAAATTCTTCTGACTCTGAGGAAGATCAGGATGGCTTAGACATTGCAGTTGAAGGTGATGAATTGAATGTGATGGAGCATCCAGCAGCAAGTAGATCTCAGGAGGAGATATCTTGTCTGCCTTCTCATCTTCAAGATTGCCATGCTAGTCCCATGGTTAGACTGGATAGAGGAGATGATAATCCTTTGAAGAGTATTGACGATTATGAGTATAGTATGCATAAGAAAATTGAGCACATCATGAGTCCTCTTGACCACTCTGTGAAGTCAGAAGATTATAACATCACTTCAGAGGTAGCATTCAAAAATAATAGGGACATTACTCATTCTGCTGGGATTTGTTCCCGAGACACTCGTGGTGGAACATCATTGTCGGGCAAGGCTGTGATTCCTGTTAATAATAATAATAATGTTCCATTGGTGCCACCATCTGATGAAGACTCATCCAGAATGCATGTCTTCTGTCTAGAGCATGCTGCAGAAGCAGACAAGCAACTTCGTCCAATTGGAGGAGCGCACATTTTCCTCTTTTGTCATCCAGATTACCCGAAGATAGAGGCTGAAGCGAAGGTTGTGGTAGAAGAACTGGGGATTGGTTACACTTGGAAGAATACTGTATACAGGCATGCTAACAGAGAAGATGAGAAGAGGATTCAGTCGGCTCTGGATAGTGAGGAAGCTAATCCTGGGAATGGGGACTGGGCTGTAAAGCTGGGAATCAATCTCTTTTATAGTGCCAATCTTAGCCGCTCTCCACTCTATAGTAAGCAGATGCCTTACAATTCTGTTATATATAATGCATTTGGTTGTAGCTCTCCAACAAGCTCTCCCACAGAACCCAAGGTCTATAAGAGAAGGGCCAACAAACAGAAAAAGGTAGTTGCTGGGAAATGGTGTGGCAAAGTCTGGATGTCCAATCAAGTCCACCCCCTTTTAGCAAAACGAGATCTGGAAGATGTTGAGGATGAGAAAAGTTTACATGGGAGGCCATTATCTGATGAGAAATTTGAATCAGATAGTACCCTTAAAAGAAATACTATGGTTAGAAAATCTGGTAGGAAAAGGAAAATGACTGTCGAGAGTGGAGGAACCAGGGAAGGAAGTTTTGCAGAGAGAGATTGGCCTTCAGATAGTTCATTAGAAGATAAATCCAATCAATCTCAAAGGCGGATTCCTCGAAGTAAGCAAACCAGGCATATTGAGAGAGATGATACTGCTTCAGAAGGGGATTATTCTCCTCTGCAGCATCATAAAAAGCCCATAAGCAAGCATACAAAATTCATGCAAAGTGATGCTGTTTCAGATGATTCACTGGATGATAATACTTTACAGCAATGGAGAAAGGGAACTGTCAAGGAAGCTAAATTTATTGACAGTGATGTAGTTTCAGATGACACAATGGATCATGATTCTGATTGGCCACATAGGGCAGAGCTTAGCAACAAGCAAGATGCTATTTCAGAGGATTCACTGGGGGTTGGTTCTCTTCAGCTGCAGAGTAATACTCCTAAAAGCAAGTATGATCAATACATTGCCGAAGAAGATGTGATTTCTGATGACCAAACAGAGGTTTATTTTCAGAAGCAGAAAGGGAGGATAACAATAAGCAGCCAAAGCAAATACCTATCTGAAAATTATACCATGATATCTGATGACCACATGCAGCACCACATGCAGAAGAATCAACGGAGGAATCCTAAAAGCAGGAAGGGCAAATACCTTGATCAAGAGGATGTTATATCTGATGACGAAGTGGAGGATCATTCTCGCAAGTATCAAAGAAGGATTCCTAAAGACAGGCAAGCCAAATGCTTTGGTGAGGAGGATTCAATGTCTGATGACCAGTTGGATGATAACTTTCAGAAGACCCAGACGAATGTTCGAAGTAGAAGGCAAAGTAAAAGCAGTGGTAGAGAAGTTATGGATGACTCAACTGAGAATAATTCTCAACTGCTGCGCGGGACTCCTAAAAGGAAGCAAGTGAAATGCATGGATGAAGACTATGTAAGTTCAGATGATCAAATGGAGGAGGATTCTCATCAGCAACACAGGAGAACTCTTCGAAGTAAGCAATCTAAATCACAGACTCTTCAACAAATGAAACAAGCGAATCCCCGTGCGACAAGGAAGACATCCAGGCCTGTGAAGCGAGGTGCCCTTGTGCTAATGAAATCAAAGGCTCCTCGAAAAACGAAGCAGCAGCCTCGTGTGTTGAATAGTCAATCTGGTACATCCAGAGATGAGGATTCACAAATAGAACAGGAGGAAGAAGGTGGTCCTAGCACACGCCTTCGGAAGAGAGTCCCTAAAACTGAGAAGGAACCTGAAGGAGAATCAAAAGAAAAAGAAACCAAAAGGAAAAGGGTGAAAAACACAGCAGCTTCAAAAGTTTCACGTGGCAAGGCCAGAGTGAAGGATGAGGAAGGAGAATACCAGTGTGACATTGAGGGGTGCACCATGAGTTTTGAGACTAAACAGGAACTGACGAGTCATAAGAGAAATATCTGTCCTGTGAAAGGGTGTGGAAAGAAGTTTTTCTCGCACAAATATCTAGTGCAGCACCGCCGGGTTCACGAGGACGACCGCCCCCTGAAGTGCCCTTGGAAGGGCTGCAAGATGACTTTCAAGTGGGCTTGGGCTCGCACTGAACATATTCGAGTTCACACCGGTGCTCGTCCTTATGTATGTGCTGAGCCGGGATGTGCGCAGACCTTCAGATTCGTTTCTGATTTCAGTCGTCATAAGCGAAAGACTGGTCATGTGGCAAAGAGTCGTGAATAG 4710 0.4435 MAACSSEEVFPWLKSLPVAPEYRPTAAEFHDPIGYIFKIEKEASKYGICKIIPPVSPSPKKTAISNLNRCQPQFTTRQQQIGFCPRRQQPVRRPVWHSGNQYSFREFESKAKTFEKSFLKKGKKSTPLSPLEVETLYWKATVDKPFSVEYANDMPGSAFCPMKENVYGGGDGYVTVGETAWNMRGVSRANGSLLRFMKEEIPGVTSPMVYLAMMFSWFAWHVEDHDLHSLNYLHMGAPKTWYGVPKDAAVAFEDVVRVHGYGGEINPLVTFSILGEKTTVMSPEVFIRAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLTFAKDAAIRRASINYPPMVSHFQLLYDLGLALCSRIPGRIAEPRSSRLKDKRKGAGETVVKELFVQDVLQNNDLLHILGSGSSIVLLPHSSSDFSVCSKLRVGSQQLKVKSEPFLNVCNSEGMGSSKGFISGDLVSNKNHGVKNVKGFYSVKEKFASLCERNRGEVCPSSSKTLQRDSEKETSQGDGLSDQRLFSCVTCGILSFSCVAIVQPKEPAARYLMSADCSFFNDWIEGSGVTSNKFTVENEDANVPKPTTYTGWTKQNARYDLYDVPVQSVEQLTQIVDQNHKQVLNTESKKGNTALALLASAYGNSSDSEEDQDGLDIAVEGDELNVMEHPAASRSQEEISCLPSHLQDCHASPMVRLDRGDDNPLKSIDDYEYSMHKKIEHIMSPLDHSVKSEDYNITSEVAFKNNRDITHSAGICSRDTRGGTSLSGKAVIPVNNNNNVPLVPPSDEDSSRMHVFCLEHAAEADKQLRPIGGAHIFLFCHPDYPKIEAEAKVVVEELGIGYTWKNTVYRHANREDEKRIQSALDSEEANPGNGDWAVKLGINLFYSANLSRSPLYSKQMPYNSVIYNAFGCSSPTSSPTEPKVYKRRANKQKKVVAGKWCGKVWMSNQVHPLLAKRDLEDVEDEKSLHGRPLSDEKFESDSTLKRNTMVRKSGRKRKMTVESGGTREGSFAERDWPSDSSLEDKSNQSQRRIPRSKQTRHIERDDTASEGDYSPLQHHKKPISKHTKFMQSDAVSDDSLDDNTLQQWRKGTVKEAKFIDSDVVSDDTMDHDSDWPHRAELSNKQDAISEDSLGVGSLQLQSNTPKSKYDQYIAEEDVISDDQTEVYFQKQKGRITISSQSKYLSENYTMISDDHMQHHMQKNQRRNPKSRKGKYLDQEDVISDDEVEDHSRKYQRRIPKDRQAKCFGEEDSMSDDQLDDNFQKTQTNVRSRRQSKSSGREVMDDSTENNSQLLRGTPKRKQVKCMDEDYVSSDDQMEEDSHQQHRRTLRSKQSKSQTLQQMKQANPRATRKTSRPVKRGALVLMKSKAPRKTKQQPRVLNSQSGTSRDEDSQIEQEEEGGPSTRLRKRVPKTEKEPEGESKEKETKRKRVKNTAASKVSRGKARVKDEEGEYQCDIEGCTMSFETKQELTSHKRNICPVKGCGKKFFSHKYLVQHRRVHEDDRPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCAQTFRFVSDFSRHKRKTGHVAKSRE* 1570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2365 1569 MobiDBLite consensus disorder prediction 1334 1352 - -
Lja4g2365 1569 MobiDBLite consensus disorder prediction 1197 1444 - -
Lja4g2365 1569 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 6 1560 - -
Lja4g2365 1569 SMART c2h2final6 1454 1476 IPR013087 -
Lja4g2365 1569 SMART c2h2final6 1537 1563 IPR013087 -
Lja4g2365 1569 SMART c2h2final6 1477 1501 IPR013087 -
Lja4g2365 1569 SMART c2h2final6 1507 1531 IPR013087 -
Lja4g2365 1569 Gene3D Classic Zinc Finger 1476 1561 - -
Lja4g2365 1569 MobiDBLite consensus disorder prediction 966 1083 - -
Lja4g2365 1569 SMART JmjN_1 18 59 IPR003349 -
Lja4g2365 1569 ProSitePatterns Zinc finger C2H2 type domain signature. 1539 1563 IPR013087 -
Lja4g2365 1569 SUPERFAMILY beta-beta-alpha zinc fingers 1493 1535 IPR036236 -
Lja4g2365 1569 SUPERFAMILY beta-beta-alpha zinc fingers 1525 1559 IPR036236 -
Lja4g2365 1569 MobiDBLite consensus disorder prediction 1375 1390 - -
Lja4g2365 1569 ProSiteProfiles Zinc finger C2H2 type domain profile. 1477 1506 IPR013087 -
Lja4g2365 1569 ProSiteProfiles JmjN domain profile. 19 60 IPR003349 -
Lja4g2365 1569 MobiDBLite consensus disorder prediction 1106 1129 - -
Lja4g2365 1569 MobiDBLite consensus disorder prediction 1260 1274 - -
Lja4g2365 1569 ProSiteProfiles JmjC domain profile. 178 344 IPR003347 -
Lja4g2365 1569 MobiDBLite consensus disorder prediction 1399 1433 - -
Lja4g2365 1569 ProSiteProfiles Zinc finger C2H2 type domain profile. 1507 1536 IPR013087 -
Lja4g2365 1569 MobiDBLite consensus disorder prediction 1301 1328 - -
Lja4g2365 1569 ProSitePatterns Zinc finger C2H2 type domain signature. 1479 1501 IPR013087 -
Lja4g2365 1569 MobiDBLite consensus disorder prediction 996 1060 - -
Lja4g2365 1569 Pfam jmjN domain 20 53 IPR003349 -
Lja4g2365 1569 ProSitePatterns Zinc finger C2H2 type domain signature. 1509 1531 IPR013087 -
Lja4g2365 1569 MobiDBLite consensus disorder prediction 1211 1253 - -
Lja4g2365 1569 SMART cupin_9 175 344 IPR003347 -
Lja4g2365 1569 MobiDBLite consensus disorder prediction 966 989 - -
Lja4g2365 1569 Gene3D Cupin 12 348 - -
Lja4g2365 1569 PANTHER LYSINE-SPECIFIC DEMETHYLASE 6 1560 - -
Lja4g2365 1569 ProSiteProfiles Zinc finger C2H2 type domain profile. 1537 1568 IPR013087 -
Lja4g2365 1569 Pfam JmjC domain, hydroxylase 208 326 IPR003347 -
Lja4g2365 1569 SUPERFAMILY Clavaminate synthase-like 193 350 - -
Lja4g2365 1569 MobiDBLite consensus disorder prediction 498 521 - -
Lja4g2365 1569 MobiDBLite consensus disorder prediction 1106 1126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2365 Lja-Chr4 26490332 26498781 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2365 793 894 C2H2 Transcription Factor Family AT5G04240 32.353 1.38e-13 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja4g2365 JmjC 1.4e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2365 - - gmx:100775813 2006.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2365 4 26490332 26498781 Lja4g2365 4 26490332 26498781 ECH
Lja4g2365 4 26490332 26498781 Lja4g2365 4 26490332 26498781 PCT
Lja1g5284 1 80769627 80778145 Lja4g2365 4 26490332 26498781 PCT