Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2364 ATGGCGTCGGGCGAGGGGTTTCTGACTGATGGGCAGAGGGAAATACTCAAGATTGCTACTCAAAATGCTGACAATTTGTCTTCGTCGCCGAAATCCCCATCGTCGTTGCTTTCGGAACATCACATAAAGGCCCCTGCTGCTGGTGGTAAGGCGCAAACAGCTGGGATAGCCGTGAGGCATGTGCGCCGGACTCACTCCGGAAAGCTTGTGCGGGTGAAGAAAGATGGTGCTGGTGGCAAGGGTACTTGGGGAAAATTGATTGACACGGATGTTGAATCTCACTTAGATCGGAATGATCCAAATTATGACAGTGGCGAGGAACCCTATCAGCTTGTTGGATCTACTATTACTGACCCCTTGGATGAATTCAAGAAAGCAGTGGTATCCATCATAGAGGAATACTTCAGTAATGGAGATGTTGACTTAGCAGCATCTGACCTCAAAGAACTAGGCTCAAGTGAATATTATGCATATTTCATTAAGCGTCTTGTGTCCTTGGCAATGGACAGGCATGATAAGGAGAAAGAAATGGCTTCCGTTCTGCTTTCAGCATTGTATGCTGATGTCATTAGCCCTGCACAGATTAGGGATGGGTTTTTTATGCTGATTGAATCTGCTGATGATCTTGCAGTAGATATCCTGGATGCAGTTGACATCCTTGCTTTATTCCTTGCACGTGCTGTTGTTGATGACATTCTTCCTCCGGCCTTTCTTGCCAGGGCAAGGAAGGCTCTTCCAGAATCTTCCAAGGGAGCTCAGGTAATTCAAACTGCTGAGAAGAGTTATCTCTCAGCTCCACACCATGCAGAACTTGTGGAAAGGCGATGGGGTGGTACCACTCACATCACTGTTGAAGAAGTGAAGAAGAAGATTGCTGATTTACTTAGAGAATATGTGGATAGTGGTGACACACTTGAAGCCTGCAGGTGTATTCGTGAATTGGGGGTTTCATTCTTCCACCATGAGGTTGTGAAGAGGGCTTTGGTACTTGCCATGGAAAATCGTTCAGCGGAACCTCTATTGTTGAAGCTATTAAAAGAAGCGGCTGAAGAAGGACTTATTAGTTCCAGCCAAATGGTGAAAGGGTTTTCTCGTTTGGAAGAAGGCCTGGATGATCTTGCTCTTGATATCCCATCCGCCAAAGCCTTGTTTCAGTCACTTGTCCCCAAGGCAATATCTGAAGGGTGGCTTGATGCTTCATTTACCGATTCTGCTGGTGAAGATGGGGACATCCAAGTTGAAGATGAGAAGTTGAGGAAGTACAAAGAGGAAATTGTATCTATAATTCATGAGTATTTTCTCTCTGATGACATTCCTGAACTCATTAGAAGTCTAGAAGATCTTGGAGCACCTGAGTATAACCCAATATTTTTGAAGAAGCTTATAACTCTTGCTATGGATCGAAAGAACAGAGAAAAGGAAATGGCATCTGTCCTGTTATCTGCTCTTCATATAGAGATATTCTCAACAGAGGATATAGTCAATGGTTTTGTCATGCTTCTGGAAAGTGCAGAAGACACAGCACTGGATATTTTGGATGCTTCAAATGAGCTTGCTCTTTTTCTAGCTCGGGCTGTGATTGATGATGTTCTTGCCCCATTGAATTTGGAAGAAATTGGCAGCAGGTTAACCCCAAAATGCAGTGGAAGTGAAACTGTGCGCATGGCTCGGACTCTGGTTTCTGCTCGCCATGCTGGTGAAAGGCTTTTGAGGTGCTGGGGTGGGGGAACTGGATGGGCCGTGGAGGATGCTAAGGACAAGATCATGAAGCTCCTGGAGGAGTATGAAAGCAGTGGGGTCGTGAGCGAAGCATGCCAGTGTATTCGTGACCTGGGAATGTCTTTCTTCAACCATGAGGTAGTGAAGAAAGCTTTGGTTATGGCCATGGAGAAGCAGAATGACAGGATGCTAGATCTGCTGCAGGAGTGCTTCAGTGAAGGACTGATCACCATCAACCAGATGACCAAAGGGTTCACCCGTGTTAAGGATAGTCTTGATGATCTGGCTCTGGACATTCCAAATGCAAAGGAAAAATTTGGCTTCTATGTGGAGCAGGCTCAAGCAAAGGGCTGGCTTCTACCATCATTTGATTCGTCTACCACAGATGTCTAA 2112 0.456 MASGEGFLTDGQREILKIATQNADNLSSSPKSPSSLLSEHHIKAPAAGGKAQTAGIAVRHVRRTHSGKLVRVKKDGAGGKGTWGKLIDTDVESHLDRNDPNYDSGEEPYQLVGSTITDPLDEFKKAVVSIIEEYFSNGDVDLAASDLKELGSSEYYAYFIKRLVSLAMDRHDKEKEMASVLLSALYADVISPAQIRDGFFMLIESADDLAVDILDAVDILALFLARAVVDDILPPAFLARARKALPESSKGAQVIQTAEKSYLSAPHHAELVERRWGGTTHITVEEVKKKIADLLREYVDSGDTLEACRCIRELGVSFFHHEVVKRALVLAMENRSAEPLLLKLLKEAAEEGLISSSQMVKGFSRLEEGLDDLALDIPSAKALFQSLVPKAISEGWLDASFTDSAGEDGDIQVEDEKLRKYKEEIVSIIHEYFLSDDIPELIRSLEDLGAPEYNPIFLKKLITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEIGSRLTPKCSGSETVRMARTLVSARHAGERLLRCWGGGTGWAVEDAKDKIMKLLEEYESSGVVSEACQCIRDLGMSFFNHEVVKKALVMAMEKQNDRMLDLLQECFSEGLITINQMTKGFTRVKDSLDDLALDIPNAKEKFGFYVEQAQAKGWLLPSFDSSTTDV* 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2364 703 Pfam MA3 domain 287 398 IPR003891 -
Lja4g2364 703 Pfam MA3 domain 123 234 IPR003891 -
Lja4g2364 703 Pfam MA3 domain 422 531 IPR003891 -
Lja4g2364 703 Pfam MA3 domain 585 692 IPR003891 -
Lja4g2364 703 ProSiteProfiles MI domain profile. 286 407 IPR003891 -
Lja4g2364 703 ProSiteProfiles MI domain profile. 583 702 IPR003891 -
Lja4g2364 703 PANTHER PROGRAMMED CELL DEATH PROTEIN 4-LIKE 1 695 - -
Lja4g2364 703 ProSiteProfiles MI domain profile. 420 541 IPR003891 -
Lja4g2364 703 SUPERFAMILY ARM repeat 580 697 IPR016024 -
Lja4g2364 703 SUPERFAMILY ARM repeat 120 279 IPR016024 -
Lja4g2364 703 PANTHER PROGRAMMED CELL DEATH 4 1 695 IPR039778 GO:0045892
Lja4g2364 703 SUPERFAMILY ARM repeat 283 405 IPR016024 -
Lja4g2364 703 Gene3D - 116 264 - -
Lja4g2364 703 Gene3D - 411 564 - -
Lja4g2364 703 SUPERFAMILY ARM repeat 419 576 IPR016024 -
Lja4g2364 703 SMART ma3_7 287 398 IPR003891 -
Lja4g2364 703 SMART ma3_7 584 693 IPR003891 -
Lja4g2364 703 SMART ma3_7 123 234 IPR003891 -
Lja4g2364 703 SMART ma3_7 421 532 IPR003891 -
Lja4g2364 703 ProSiteProfiles MI domain profile. 122 243 IPR003891 -
Lja4g2364 703 Gene3D - 571 700 - -
Lja4g2364 703 Gene3D - 273 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2364 Lja-Chr4 26478747 26483607 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2364 587 683 Eukaryotic Initiation Factors Gene Family AT5G57870 32.000 1.91e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2364 - - gmx:100809081 1234.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2364 4 26478747 26483607 Lja4g2364 4 26478747 26483607 ECH