Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2363 ATGGATGGCAGGAGGCATTCTGTTGATATTCCTATTTCTAAAACCCTTGTAGCACTGAGAAGAGTCAGGTCATTGAGGGATCCATCAACCAATGGTGTTAGCAAGCTCTCTCCTGTGGTTGATGATGGACATTGGGGAAATGGTTCTGGTAATGGGGTTTCTCTGAGGTTCTTGAATGCTTCTCACGCTTATGATTCTGAGTATAATGATTTTTTAAGATCAAAGAATTCAGATTTTAAGGGGCAGAGAGAGCAGGATACTACTGATTTTGAATTGGATTGTCGCCTGTTGAACTCAAAGATGAACTATTGTGGGATCTCATATCAGGATACTCAACATGATGATGTAGTTTACTCTAATCCTAAGCAACGGGGTATTTCTGGAAATAAATCACCAAATGAAAGCTGTTGTAGTAATCTGGGAGGTAGAGGATTGGATTTGGCTTCCATGATACCTCATAGTAATCCTTTGAAGGATGAGGAATCACCCTATTTATCAAATGCCTTATCATCACAATTTGGGAGAGTAGATACCTCAAAGTCAACCAGGAAATCGCTACGCAAGAATAAAGTGAAACCATCTGAATTTATGAGTGATAATGAAAGCTATTTAGGGAGTCCATGCCTTTCTGTTCATAATGACTCTGCACTTATAACTCAAGATATTGATATTTTAGTTGATCACCGTGGATGCGGATTAAGCTGTTGTTGGTCAAAGTCCCCTAGGTTTAGAGAATCAAATCATTATTCTGAAAATGAAGACCTTCCCTTGATATTGCAAAATGTCAATGAGACAGATTTTCGTGGGCATCAAAGCATGAGAAACATTGGTGGTGAAGTTAGTCCAACTTTGGAAACTCCTAGAAGTTTATCTATGAAATTTAGGCCGAAACGTTTCTATGATTTGGTTGGACAGAATATGGTGGGAAAGTCTCTTTTGGGTGCCATCTCCAGAGGAAGGATAGCGTCATTTTATCTCTTCCATGGCCCCCGAGGTACCGGCAAGACCTCTGCATCGAGGATATTTGCTGCTGCACTGAATTGCCTCTCCCTTGAGGAGCAAAGGCCATGTGGTCTGTGTAGAGAATGCGTTTTGTTCTTTTCTGGAAGAAGTAAAGATGTTAAGGAAGTGGACTCTTTGAGAATCAATCATGCTGATAAGGTTAAATCCCTTGTGAAGAATGCATGCTTCCCTCCAGTTTCCTCGCGTTTTAAGGTGTTCATAATTGATGAATGCCACTTGTTGCATGGGGAAACATGGGCGAGTCTTTTGATTAGCCTAGAAAATGTTTATCAACATGTGGTTTTTGTGATGATCACTCCAGATTTGGATAAGCTTCCTCGTAGTGCAGTTTCCCGGGCTCAGAGGTACCACTTCACAAAGATTAAAGATGCTGACATTGCAAGCAGGTTGAAAAAAATCTGTGCTGAAGAAGGTCTTGAATATGAACAAGATGCTTTGGATTTTATTGCTGGTAAGTCCTGTGGTTCCCTTAGGGATGCAGAAATGATGCTTGATCAGCTGAGTTTGCTTGGTAAAAAGATTACAACTTCCTTAGTTTACGAGCTTACTGGGGTCGTTTCTGATGATGAATTGCTTGATTTGCTGGACATGGCTTTGTCATCTGATACTTCAAATACAGTTAAAAGAGCCCGGGAGCTGATGAGATCAAGGATAGATCCCTTACAACTTATATCACAGCTGGCAAATATTATCATGGATATTCTTGCAGGGAAATGTGAACTTGGTTGTTCTGAAATCAGAAGAAGATTTTCTAGTAGACATACCTCGGAAGCGGACCAGCAGAAACTTAGCCATGCATTAAAAATACTCTCTGAAACGGAGAAGCAATTGAGAATTTGTAAGAATCAGACAACATGGTTCACGGCAGCTCTTCTACAGTTAAGTTCTATAGAATGTTCATCTGTGGATGCAAATGATACCAAGTTGTTCATGAAAGCTGCTTCAAGTATAGATGGTGATTTGTGCAGTGCATCTTCTACAGGGGAGAGCTTGAAGCATCTTGCTACAGGTCAGTGTGATGAGAAGTCAAATAGATTAGGAGTCCAAGAGGATCACCAAGAGATATTGGATTCCATATGGCATCATGCTACAGAGATATGTCAATCTAGCAGGCTCAAGACTTTTCTCGGGAAGCAGGGGAAGTTGTCTTCAGTTTGTATTAATCAAGGTCTTGCAGTTGTCGAGTTGGAGTTCCACCATCGTGACTATGTAGCTAGGGCTGAGAAGTCGTGGAAACAGATTGCAAGTTCCCTGCAATTCATGTTGGGCTGTAACATTGAGCTTAGAATCAATCATGTACCTTGCGCTTCAGATTCTAAGTATGCTAAATTGAAGAGGTCATTCAATTTCTTTAGCTGTTCACGCAGAATTCTCGGAAAGTCATTATCATCTGATGAACAAGGAAGTGAATCAGACTATGCTGATCACACCTCACAAAAGCCCATGATGAAGGATCAAGCTCTAACTTGTTCCTCTGATTGCGGATCTCGGGTGCCGCCTCTCGAGTCCTACCATGGAATGGAGGCTGTAACAACTTTGAGAAGCTGTGAAGGGAATTTGCTAAGCTCAGGGAAAGTGTTATCGAATAGGGCGGGTGGTGAGACTCCGAGGATTTCTCTTACTAGAGTTGATTCTCTTAAGGAAGAGGGTACTCATGCGATTTCTCTTACACACAACACGAAGAAAAACAAGCCTCTTTCTCGTGTATAG 2733 0.4131 MDGRRHSVDIPISKTLVALRRVRSLRDPSTNGVSKLSPVVDDGHWGNGSGNGVSLRFLNASHAYDSEYNDFLRSKNSDFKGQREQDTTDFELDCRLLNSKMNYCGISYQDTQHDDVVYSNPKQRGISGNKSPNESCCSNLGGRGLDLASMIPHSNPLKDEESPYLSNALSSQFGRVDTSKSTRKSLRKNKVKPSEFMSDNESYLGSPCLSVHNDSALITQDIDILVDHRGCGLSCCWSKSPRFRESNHYSENEDLPLILQNVNETDFRGHQSMRNIGGEVSPTLETPRSLSMKFRPKRFYDLVGQNMVGKSLLGAISRGRIASFYLFHGPRGTGKTSASRIFAAALNCLSLEEQRPCGLCRECVLFFSGRSKDVKEVDSLRINHADKVKSLVKNACFPPVSSRFKVFIIDECHLLHGETWASLLISLENVYQHVVFVMITPDLDKLPRSAVSRAQRYHFTKIKDADIASRLKKICAEEGLEYEQDALDFIAGKSCGSLRDAEMMLDQLSLLGKKITTSLVYELTGVVSDDELLDLLDMALSSDTSNTVKRARELMRSRIDPLQLISQLANIIMDILAGKCELGCSEIRRRFSSRHTSEADQQKLSHALKILSETEKQLRICKNQTTWFTAALLQLSSIECSSVDANDTKLFMKAASSIDGDLCSASSTGESLKHLATGQCDEKSNRLGVQEDHQEILDSIWHHATEICQSSRLKTFLGKQGKLSSVCINQGLAVVELEFHHRDYVARAEKSWKQIASSLQFMLGCNIELRINHVPCASDSKYAKLKRSFNFFSCSRRILGKSLSSDEQGSESDYADHTSQKPMMKDQALTCSSDCGSRVPPLESYHGMEAVTTLRSCEGNLLSSGKVLSNRAGGETPRISLTRVDSLKEEGTHAISLTHNTKKNKPLSRV* 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2363 910 PANTHER DNA POLYMERASE III SUBUNIT GAMMA/TAU 107 898 - -
Lja4g2363 910 Gene3D - 525 640 - -
Lja4g2363 910 MobiDBLite consensus disorder prediction 176 200 - -
Lja4g2363 910 CDD HLD_clamp_pol_III_gamma_tau 462 525 IPR045085 -
Lja4g2363 910 Gene3D - 283 460 IPR027417 -
Lja4g2363 910 Pfam DNA polymerase III, delta subunit 305 462 - -
Lja4g2363 910 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 289 635 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Lja4g2363 910 MobiDBLite consensus disorder prediction 804 823 - -
Lja4g2363 910 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 107 898 - -
Lja4g2363 910 CDD AAA 303 453 - -
Lja4g2363 910 MobiDBLite consensus disorder prediction 180 195 - -
Lja4g2363 910 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 313 509 IPR027417 -
Lja4g2363 910 Gene3D - 463 524 - -
Lja4g2363 910 SUPERFAMILY post-AAA+ oligomerization domain-like 532 632 IPR008921 GO:0003677|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2363 Lja-Chr4 26471769 26477701 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2363 280 574 Core DNA Replication Machinery Family AT1G21690 24.749 2.37e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2363 - - pvu:PHAVU_003G207500g 1234.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2363 4 26471769 26477701 Lja4g2363 4 26471769 26477701 ECH
Lja4g2363 4 26471769 26477701 Lja1g5291 1 80968124 80972336 PCT