Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2362 ATGCCAACCTCCACTTCACTCTCTTCCCTCCTCTTCCTCTTCTCTCTCCTCACCCCAACCCTCATTTCCTCTTCCCATCTTCAGGACCCTGAATTGGTTGTCCAAGAAGTAAATAGTAAAATCAATGCCTCAGTGGCTAGGAGGAATTTGGGCTACCTATCATGTGGGAGTGGAAACCCCATTGATGATTGCTGGAGGTGTGACCCAAACTGGGAGAAGAACAGGCAGAGGCTAGCAGACTGTGCAATTGGCTTCGGCAAGAACGCCATTGGTGGAAGGAACGGTAAGATATACGTGGTCACCGACTCCGGCGACGACAACGCCGTCACTCCGAAGCCAGGGACATTGCGGTACGCGGTGATCCAGGATGAGCCACTATGGATCATCTTCGCCAGAGACATGGTGATTCAGCTGAAGGAGGAGCTGATCATGAACTCGTTCAAGACCATTGATGGAAGAGGAGCGAGTGTGCACATCGCTGGTGGGCCCTGCATCACGGTTCAGTATGTGACCAACATCATCATCCATGGGATACACATACATGATTGCAAGCAGGGAGGGAATGCTATGGTGAGGGACTCCCCAAAGCACTTTGGGTGGAGGACTGTATCGGACGGTGATGGTGTGTCCATCTTTGGTGGGAGCCATGTCTGGGTGGACCATTGCTCTTTGTCTAACTGTAATGATGGGTTGATCGACGCCATCCATGGTTCCACGGCGATTACCATCTCTAACAATTACATGACGCACCATGATAAGGTCATGCTGCTGGGCCACAGCGATAGTTACACCCAAGACAAGAACATGCAGGTCACCATTGCTTTTAACCACTTTGGTGAAGGTCTTGTTCAAAGAATGCCAAGGTGCAGGCATGGATATTTTCATGTGGTGAACAATGACTATACCCACTGGGAAATGTATGCTATTGGAGGAAGTGCTAACCCCACCATCAATAGCCAAGGCAATAGGTTTGTTGCACCTAATGACAGATTCAGCAAAGAGGTGACAAAGCATGAGGATGCACCAGAGAGTGAGTGGAAGGGGTGGAATTGGAGATCAGAAGGGGATTTGTTGTTAAACGGTGCGTTTTTCACAGCAACTGGAGCTGGAGCCTCTGGTAGCTATGCAAGAGCTTCAAGCCTGAGTGCAAGACCATCAACCCTAGTGGGTACTATAACCACTGGTGCTGGTGCACTCAACTGTAGAAAAGGTTCTCATTGCTAG 1224 0.4975 MPTSTSLSSLLFLFSLLTPTLISSSHLQDPELVVQEVNSKINASVARRNLGYLSCGSGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAIGGRNGKIYVVTDSGDDNAVTPKPGTLRYAVIQDEPLWIIFARDMVIQLKEELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGIHIHDCKQGGNAMVRDSPKHFGWRTVSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPNDRFSKEVTKHEDAPESEWKGWNWRSEGDLLLNGAFFTATGAGASGSYARASSLSARPSTLVGTITTGAGALNCRKGSHC* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2362 407 Pfam Pectate lyase 143 324 IPR002022 -
Lja4g2362 407 Gene3D - 58 400 IPR012334 -
Lja4g2362 407 PANTHER PECTATE LYASE 9 404 - -
Lja4g2362 407 SUPERFAMILY Pectin lyase-like 38 402 IPR011050 -
Lja4g2362 407 PANTHER PECTATE LYASE 18-RELATED 9 404 IPR045032 GO:0030570
Lja4g2362 407 PRINTS Pollen allergen Amb family signature 307 326 IPR018082 -
Lja4g2362 407 PRINTS Pollen allergen Amb family signature 378 401 IPR018082 -
Lja4g2362 407 PRINTS Pollen allergen Amb family signature 105 130 IPR018082 -
Lja4g2362 407 PRINTS Pollen allergen Amb family signature 349 373 IPR018082 -
Lja4g2362 407 PRINTS Pollen allergen Amb family signature 81 98 IPR018082 -
Lja4g2362 407 PRINTS Pollen allergen Amb family signature 141 157 IPR018082 -
Lja4g2362 407 PRINTS Pollen allergen Amb family signature 285 304 IPR018082 -
Lja4g2362 407 PRINTS Pollen allergen Amb family signature 205 226 IPR018082 -
Lja4g2362 407 SMART amb_all 133 330 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2362 Lja-Chr4 26436656 26438978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2362 1 407 Polysaccharide Lyase AT5G63180 80.244 0.0 680
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2362 K01728 - gmx:100101868 751.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5292 1 81059278 81062890 Lja4g2362 4 26436656 26438978 ECH
Lja4g2362 4 26436656 26438978 Lja4g2362 4 26436656 26438978 ECH
Lja4g2362 4 26436656 26438978 Lja1g5292 1 81059278 81062890 PCT