Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2352 ATGTCTATCACAACCATGCCTGCGTTCAAGTTCCTCACAGTGGCAGAATCATGCCTACTCTCTCAACCCTCACTCTTCTCCTCCAAAACCAGATACCCAATTCTCTCAAATTCTCTAAAGACCCTCAAGCTTCAACTCCCATGCTCAAATTCTTCACCTTTTTCACCCTCCCTCCTCTCAACAACCCACCGTTCTCCTCTCCTCACATTTGTAGCCCAGACTTCAGATTGGGCTCAGCAAGAAGAAGAGGGTGGAGCCGCATGGGAGAACGAGGGCGAACCCACATGGGCAAATGAAGATAGTGATGAAACTGAAGGTGGTGAAGAAGTGGTGGCATCTGCTGAACCTTCTGAAGATTTGAAGATCTTTGTTGGGAACTTGCCATGGGATGTTGAGAGTGAGAATTTGGCCATGCTTTTTGAGGAAGCTGGGTCGGTGGAGTTTGCTGAGGTTATTTATAATAAGGCCACTAACCAAAGTCGTGGGTTTGGATTTGTTATCATGAGTACGGCTGAAGATCTTGAGAAGGCTTTGAACAAGTTCAGTGGCTATGAATTGGATGGAAGAGTGTTGACTGTTAATAAGGCTACTCCAAAGGAAGCACGGCCTGAACGCCCGCCACGTACCTTTGGTTCTGGTTCTGGTTCCCGTGATTCTGGTTTAAGTGTCTATGTTGGTAACTTACCATGGAGTGTTGATACTGCTCGCCTGGAAGAAATTTTCAGGGAACATGGTAATGTTGAGAATGCTCGGATAGTCATGGACAGAGAGACGGGTCGATCACGTGGTTTTGGCTTTGTCACAATGTCCAGTGAAGCTGATATTAATGGTGCCATTGCTGCTCTTGATGGTCAGAGCTTGGATGGGAGAACAATCAGGGTGAGTGTTGCTGAGGGAAGGTCCGGCGGGCGTAGCTCCTTTTGA 924 0.4751 MSITTMPAFKFLTVAESCLLSQPSLFSSKTRYPILSNSLKTLKLQLPCSNSSPFSPSLLSTTHRSPLLTFVAQTSDWAQQEEEGGAAWENEGEPTWANEDSDETEGGEEVVASAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKFSGYELDGRVLTVNKATPKEARPERPPRTFGSGSGSRDSGLSVYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSVAEGRSGGRSSF* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2352 307 SUPERFAMILY RNA-binding domain, RBD 113 220 IPR035979 GO:0003676
Lja4g2352 307 SUPERFAMILY RNA-binding domain, RBD 220 304 IPR035979 GO:0003676
Lja4g2352 307 MobiDBLite consensus disorder prediction 197 218 - -
Lja4g2352 307 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 223 293 IPR000504 GO:0003723
Lja4g2352 307 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 191 IPR000504 GO:0003723
Lja4g2352 307 PANTHER OS02G0815200 PROTEIN 1 91 - -
Lja4g2352 307 Gene3D - 216 306 IPR012677 -
Lja4g2352 307 PANTHER RIBONUCLEOPROTEIN 103 301 - -
Lja4g2352 307 PANTHER RIBONUCLEOPROTEIN 1 91 - -
Lja4g2352 307 Gene3D - 72 209 IPR012677 -
Lja4g2352 307 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 198 IPR000504 GO:0003723
Lja4g2352 307 MobiDBLite consensus disorder prediction 95 109 - -
Lja4g2352 307 CDD RRM_HP0827_like 121 198 - -
Lja4g2352 307 SMART rrm1_1 222 295 IPR000504 GO:0003723
Lja4g2352 307 SMART rrm1_1 121 194 IPR000504 GO:0003723
Lja4g2352 307 MobiDBLite consensus disorder prediction 79 115 - -
Lja4g2352 307 PANTHER OS02G0815200 PROTEIN 103 301 - -
Lja4g2352 307 CDD RRM_HP0827_like 224 298 - -
Lja4g2352 307 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 221 299 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2352 Lja-Chr4 26025756 26029032 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2352 108 298 Eukaryotic Initiation Factors Gene Family AT3G16380 34.715 2.18e-23 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2352 - - gmx:100811487 355.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5301 1 81830417 81833373 Lja4g2352 4 26025756 26029032 ECH
Lja4g2352 4 26025756 26029032 Lja4g2352 4 26025756 26029032 ECH
Lja4g2352 4 26025756 26029032 Lja1g5301 1 81830417 81833373 PCT