Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2346 ATGGAGATGGAACGCGTCATCGAATTCCCCCACACTCACATGGATCGCCGCCCCAGAAAGAGAGCGAGGTTAGGCTGGGACGTCGCTGAGGCCCCCAAGGCTCAGGTAGGATTGTTTTGTGGACAAGAGGTTGGGAATATTTCTGGCTATGCTCCTTCAAGGGGTCCATCCGAACATACCAATAGTTCTCTATTTGCTAAGGGAGTTGCTCGAAATGGTTCTCCCCCTTGGCGAGATGATGACAAAGATGGGCATTACATGTTTGCAGTTGGAGAAAATTTAACATCTCGCTATAAGATCCATTGCAAAATGGGTGAAGGAACCTTTGGACAGGTCTTAGAATGCTGGGACAGAGAAAGGAAGGAAATGGTTGCCATTAAAATTGTTCGTGGTATAAAGAAATATCGAGAGGCCGCCATGATAGAAATTGAGATGTTGCAACAGCTTGGGAAACATGACAAAGGAGGCAGCCGTTGTGTTCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAGACAACTATTGGAATGTATTGCATTCATGCATGACTTGTGCATGATCCATACTGACCTGAAGCCTGAGAACATACTGCTAGTTTCACCAGATTATGTCAAAGTTCCTGACTACAAGAATTCATCTAGATCACCAAATTCCTATTTCAAGAGAGTGCCCAAGTCAAGTGCTATAAAGGTTATTGACTTTGGCAGTACCACTTATAAGCGAGAAGATCAAAGTTACATTGTATCAACTCGTCATTATAGAGCACCTGAAGTCATCCTTGGACTTGGCTGGAGTTATCCATGTGATACATGGAGCGTGGGATGTATACTGGTTGAACTATGCACGGGCGAAGCTTTGTTTCAGACTCATGAGAATTTAGAGCACCTTGCCATGATGGAGAGGGTACTTGGTCCATTACCGCAGCACATGTTGAAGAGAGTCGACCGACATTCTGAGAAATATGTTAGAAGGGGTAGATTAGACTGGCCTGAGGGCGCGACCTCAAGGGATAGTATTAAAGCTGTAACAAAGCTTCCCAGGCTACAGAACCTTATAATGCAGCATGTTGATCATTCAGCTGGTGATCTCATACATCTCTTGCAAGGGTTACTTAGATATGACCCCTCTGAGAGACTTACAGCTAAGGAAGCTCTGAATCATTCTTTCTTCATGAGAGATAATCTTCGGAGATAA 1293 0.437 MEMERVIEFPHTHMDRRPRKRARLGWDVAEAPKAQVGLFCGQEVGNISGYAPSRGPSEHTNSSLFAKGVARNGSPPWRDDDKDGHYMFAVGENLTSRYKIHCKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEMLQQLGKHDKGGSRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNNYRSFPIDLVREIGRQLLECIAFMHDLCMIHTDLKPENILLVSPDYVKVPDYKNSSRSPNSYFKRVPKSSAIKVIDFGSTTYKREDQSYIVSTRHYRAPEVILGLGWSYPCDTWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPQHMLKRVDRHSEKYVRRGRLDWPEGATSRDSIKAVTKLPRLQNLIMQHVDHSAGDLIHLLQGLLRYDPSERLTAKEALNHSFFMRDNLRR* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2346 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Lja4g2346 430 Gene3D Phosphorylase Kinase; domain 1 85 178 - -
Lja4g2346 430 SUPERFAMILY Protein kinase-like (PK-like) 85 426 IPR011009 -
Lja4g2346 430 Pfam Protein kinase domain 98 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2346 430 PANTHER KINASE AFC1 1 430 - -
Lja4g2346 430 SMART serkin_6 98 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2346 430 Gene3D Transferase(Phosphotransferase) domain 1 152 423 - -
Lja4g2346 430 CDD PKc_CLK 85 423 - -
Lja4g2346 430 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 1 430 - -
Lja4g2346 430 ProSiteProfiles Protein kinase domain profile. 98 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2346 Lja-Chr4 25907114 25911168 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2346 103 423 Core Cell Cycle Gene Families AT1G76540 25.672 1.15e-26 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Lja4g2346 Pkinase 1.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2346 K08287 - gmx:100804452 829.32