Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2339 ATGGCAATTTCAGCAGCTTCTGCAACTTCTTCTTCCTCCAAATTCCTCCACCCACACCCTTCTCCTTCTTCCTCTCACTCTCACTCCTCTTCCCCCTGCCTCTTCCTCAGACCCCAATTACCCACCACCCACCTCTCCTCCTCCTTCAATCCTTCCACAATCCTCCTCAACGCGCCGCCGCAACAACCCTCCGCCCCCTTCCACCGCCGCTCCTCCTCCCTCACCGTCCGCGCCGCTCGCGGCAAGTTCGAGCGCAAGAAACCCCATGTCAACATCGGCACCATCGGCCACGTCGACCACGGCAAAACCACCCTCACCGCCGCCCTCACCATGGCCCTCGCTTCCCTCGGAAACAGCGCCCCCAAGAAATACGACGAAATCGACGCCGCCCCTGAAGAGCGCGCTCGCGGTATCACCATCAACACCGCCACCGTCGAGTACGAGACCGAGAATCGCCACTATGCTCACGTTGACTGCCCCGGCCACGCTGATTACGTCAAGAACATGATTACCGGTGCCGCCCAGATGGACGGCGCTATTCTTGTTGTCTCCGGCGCCGACGGCCCTATGCCGCAGACCAAAGAGCACATCCTCTTGGCGAAGCAGGTTGGTGTACCTAACATGGTGGTTTTCCTCAACAAGCAGGACCAGGTTGATGATGAGGAGCTTCTGCAACTCGTTGAATTGGAGGTTCGGGAGCTTCTATCGTCTTACGAGTTCCCTGGGGATGATGTTCCCATTGTTTCTGGTTCTGCCCTTTTGGCTCTTGAAGCTCTAATGGCGAACCCTGCTATCAAACGTGGTGAGAATCAGTGGGTGGATAAGATTTATGAGCTTATGGATAATGTGGATAGCTACATTCCTATCCCTCAGCGCCAAACCGATCTTCCGTTTTTGTGTGCCATTGAAGATGTGTTTTCCATCACGGGTCGTGGAACCGTGGCCACCGGGCGTATTGAGAGGGGGTTGGTTAAGGTTGGTGACACGGTTGAGATTGTTGGTGTTAGGGAAACTAGGACCACTACTGTGACTGGGGTGGAGATGTTTCAGAAGATTCTGGATGATGCCATGGCTGGGGACAATGTGGGGTTGTTGCTTAGGGGTATTCAGAAGGTTGATATTCAGAGAGGGATGGTTTTGGCTAAGCCTGGAACTATTACACCACACACCAAGTTTTCTGCGATTGTGTACGTGTTGAAGAAGGAAGAAGGTGGGAGGCACTCGCCTTTCTTTGCTGGTTACAGGCCACAGTTCTACATGAGGACTACTGATGTCACTGGCAAAGTCACGGCCATTATGAATGATAAGGATGAGGAGTCCAAGATGGTGATGCCCGGAGACCGTGTTAAGATGGTGGTTGAGCTTATTGTTCCAGTGGCTTGTGAACAGGGAATGAGGTTTGCTATTAGAGAAGGAGGCAAAACTGTTGGAGCTGGTGTTATCCAATCGATCATTGAGTGA 1461 0.5325 MAISAASATSSSSKFLHPHPSPSSSHSHSSSPCLFLRPQLPTTHLSSSFNPSTILLNAPPQQPSAPFHRRSSSLTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIVSGSALLALEALMANPAIKRGENQWVDKIYELMDNVDSYIPIPQRQTDLPFLCAIEDVFSITGRGTVATGRIERGLVKVGDTVEIVGVRETRTTTVTGVEMFQKILDDAMAGDNVGLLLRGIQKVDIQRGMVLAKPGTITPHTKFSAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTAIMNDKDEESKMVMPGDRVKMVVELIVPVACEQGMRFAIREGGKTVGAGVIQSIIE* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2339 486 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 128 143 IPR031157 -
Lja4g2339 486 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 87 291 IPR000795 GO:0003924|GO:0005525
Lja4g2339 486 Gene3D - 79 290 IPR027417 -
Lja4g2339 486 Hamap Elongation factor Tu [tuf]. 78 486 IPR004541 GO:0003746|GO:0005525|GO:0006414
Lja4g2339 486 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 85 313 IPR027417 -
Lja4g2339 486 TIGRFAM EF-Tu: translation elongation factor Tu 79 486 IPR004541 GO:0003746|GO:0005525|GO:0006414
Lja4g2339 486 SUPERFAMILY Translation proteins 292 388 IPR009000 -
Lja4g2339 486 PANTHER ELONGATION FACTOR TU-RELATED 35 486 - -
Lja4g2339 486 Pfam Elongation factor Tu C-terminal domain 385 484 IPR004160 -
Lja4g2339 486 Gene3D Translation factors 293 421 - -
Lja4g2339 486 CDD EF_Tu 88 290 IPR041709 -
Lja4g2339 486 PANTHER ELONGATION FACTOR TU 35 486 - -
Lja4g2339 486 Pfam Elongation factor Tu GTP binding domain 87 288 IPR000795 GO:0003924|GO:0005525
Lja4g2339 486 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 385 485 IPR009001 -
Lja4g2339 486 CDD EFTU_II 298 384 IPR033720 -
Lja4g2339 486 Gene3D Translation factors 425 485 - -
Lja4g2339 486 PRINTS GTP-binding elongation factor signature 135 143 IPR000795 GO:0003924|GO:0005525
Lja4g2339 486 PRINTS GTP-binding elongation factor signature 208 217 IPR000795 GO:0003924|GO:0005525
Lja4g2339 486 PRINTS GTP-binding elongation factor signature 91 104 IPR000795 GO:0003924|GO:0005525
Lja4g2339 486 PRINTS GTP-binding elongation factor signature 171 182 IPR000795 GO:0003924|GO:0005525
Lja4g2339 486 PRINTS GTP-binding elongation factor signature 155 165 IPR000795 GO:0003924|GO:0005525
Lja4g2339 486 MobiDBLite consensus disorder prediction 1 32 - -
Lja4g2339 486 CDD EFTU_III 387 481 - -
Lja4g2339 486 Pfam Elongation factor Tu domain 2 312 380 IPR004161 GO:0005525
Lja4g2339 486 TIGRFAM small_GTP: small GTP-binding protein domain 90 222 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2339 Lja-Chr4 25860299 25862251 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2339 85 484 Eukaryotic Initiation Factors Gene Family AT5G60390 28.795 9.56e-45 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2339 K02358 - mnt:21401943 748.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2339 4 25860299 25862251 Lja4g2339 4 25860299 25862251 ECH