Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2329 ATGGAATCTAAACCCATTAAGCTCCTCTGTAGCTACGGCGGCAAGATCCTCCCCCGCCTCACCGACGGCACGCTCCGCTACTCCGGCGGCCACACCAGAGTCATCACCCACCATTCTTCCACCTCTTTCTCAGAGTTGATGGAGAAGCTTGGTGAATTGTGCGGTTCATCGCCGGTGACACTGAAGTGTCAATTGCCGAAAGGAGACTTGGAGACTTTGATTTCGATCACCAGCGACGAGGATCTGGCTAACATAATTGACGAATACGATCGAGCTTCATCATCGTTGGATAGTCCGCTGAAGATCAGAGCCATTCTCTCGCCGCCGAAGAAATTATCATCTCCTCCTCCGTCTTCTTCGTCGTCCTCCGCCTCCTACTCTCCATCCAGTTCCCCTCATGCCTACTCCCCGCCATCTGCGGCGGCGTATCGGCTCAACCGTTGCTCCCGGGTGCCGCTTGGGTACCCGATCGGTGTCCGGAAAGGTTGTTGGTACACGCGGCACGTAGACGGAAGCCTTGCCGGGAGTCCCCGGTTCTGGGGGGCATCACTGCAATAG 558 0.5645 MESKPIKLLCSYGGKILPRLTDGTLRYSGGHTRVITHHSSTSFSELMEKLGELCGSSPVTLKCQLPKGDLETLISITSDEDLANIIDEYDRASSSLDSPLKIRAILSPPKKLSSPPPSSSSSSASYSPSSSPHAYSPPSAAAYRLNRCSRVPLGYPIGVRKGCWYTRHVDGSLAGSPRFWGASLQ* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2329 185 PANTHER OS05G0427100 PROTEIN-RELATED 1 179 - -
Lja4g2329 185 SUPERFAMILY CAD & PB1 domains 22 112 - -
Lja4g2329 185 MobiDBLite consensus disorder prediction 116 131 - -
Lja4g2329 185 Pfam PB1 domain 25 93 IPR000270 GO:0005515
Lja4g2329 185 MobiDBLite consensus disorder prediction 107 131 - -
Lja4g2329 185 CDD PB1_UP2 9 106 - -
Lja4g2329 185 SMART PB1_new 20 109 IPR000270 GO:0005515
Lja4g2329 185 PANTHER PB1 DOMAIN PROTEIN 1 179 - -
Lja4g2329 185 Gene3D - 26 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2329 Lja-Chr4 25796363 25797490 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2329 6 116 MAP Kinase Kinase Kinase AT1G04700 47.748 9.04e-24 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2329 - - gsj:114393520 172.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2329 4 25796363 25797490 Lja4g2329 4 25796363 25797490 ECH