Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2323 ATGAACCCCTTCGACAATCGATACTCCGATTCCTCTTCATATCGCGATCGTCGCAGTGATGTAATTGGACCTATGCGGCCACCCGTTGCCAGCCGCGTCGGTCCGGTTCCCTACGGTGCTCCATATGCGGCCCCTGTACCCAGCGGTTTCGGACCCGCCGCACACGCTAACCCGAATCCGCCGTTTGTTCCTCCTTCTGGGGGATTCTCTGTTGGCCGAGGCGGTGGATTTGGTGGTAGAGGGGGTGATAGGAAATATGACACGGGTCGTTATAGCGGTGGTGGTGGTGGAAGAGGTCGTGGCGGTGGTAGTTTTAGGGGTGGAGGCAGAGGTGGGAGAGGCGGTGGGTTTGGAGGTAGACATGGTGGTGGGTCTTCTAAGGATGACTTGAACAATATTTCGCTACCGAAACAAGATTTTAGGAATCTGGTCCCTTTTGAGAAGAATTTTTACATTGAGAGCCCTGCGGTAAGGGCTATGTCTGAACAAGAAGTTATGCAATACCGTGCAAGCAGGGATATTACTGTCCAAGGGCAGGATGTGCCGAGACCTATTCGGTCGTTTCATGAAGCTAGTTTCCCTGGTTACTGCCTTGAGGTCTTTGCCAGATTGGGTTTTGTTGAGCCCACTCCAATCCAGGCTCAGGGTTGGCCCATGGCTCTGACGGGTAGGGATTTGATTGGCATTGCTGAGACTGGCTCGGGTAAAACCTTGGCGTATCTGCTTCCTGCATTAGTGCATGTGAATGCTCAACCTCGATTGGTTCAAGGGGATGGTCCCATTGTCTTAGTTTTGGCACCAACTAGAGAGTTAGCTGTTCAAATTCAACAAGAAGCTATGAAATTTGGGTCACGAGCAAATATTAGAATTACTTGCATCTATGGCGGTGCACCAAAGGGCCCTCAAATTCGTGACCTTCAAAGAGGCGTTGAGATTGTAATTGCTACCCCTGGTCGTCTAATCGATATGTTGGAAGCTCAGCACACAAACCTGCAGAGAGTGACTTACCTTGTCTTGGATGAAGCTGATCGAATGTTGGACATGGGTTTTGAACCTCAGATACGGAAAATTGTTAGCCAGATTCGACCAGATAGGCAGACACTATACTGGAGCGCTACATGGCCAAGGGAGGTTGAAACTCTTGCAAGACAGTTTCTGCGCAACGCATATAAGGTAATTATTGGTTCACCAGATCTGAAAGCAAATCATTGTATAAATCAAGTTGTTGAAGTTGTAACCGACATTGAGAAATACAATAGATTGATCAAACTGCTGAAAGAAGTGATGGATGGTGGCCGAATTCTAATATTTATGGAGACCAAAAAGGGATGTGACCAAGTTACAAGACAATTGAGAATGGAAGGATGGCCAGCACTATCCATCCATGGTGATAAAAACCAGGCTGAAAGGGACTGGGTTTTGGCTGAATTTAAAAGTGGCAGAAGTCCAATTATGACTGCCACTGATGTTGCTGCACGGGGTCTTGATGTGAAAGACATAAAATTTGTGATCAATTATGATTTTCCATCAAGCCTGGAAGATTATGTCCACAGAATTGGTCGAACTGGTCGTGCAGGGGCTAAAGGAACCGCACTCACCTTTTTCACCCATGCCAATGCCAAATATGCTAGGGAGCTAATCAAGATTTTACAAGATGCTGGTCAAGTTGTGAGTCCTGCACTGTCTGTTATGGCTCGATCTGCTGGTTCTGGTCCACTTGGATCCGGAGGAAGCTTTCGCTCAAGAGGACGAGGAGGCTATGGCAATAGGGGTTCAATATCAGGATCCAATGCCATTCCTGTTGGTATGAAAAGGCCTTGGCCGTATTAG 1830 0.4776 MNPFDNRYSDSSSYRDRRSDVIGPMRPPVASRVGPVPYGAPYAAPVPSGFGPAAHANPNPPFVPPSGGFSVGRGGGFGGRGGDRKYDTGRYSGGGGGRGRGGGSFRGGGRGGRGGGFGGRHGGGSSKDDLNNISLPKQDFRNLVPFEKNFYIESPAVRAMSEQEVMQYRASRDITVQGQDVPRPIRSFHEASFPGYCLEVFARLGFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLVQGDGPIVLVLAPTRELAVQIQQEAMKFGSRANIRITCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPREVETLARQFLRNAYKVIIGSPDLKANHCINQVVEVVTDIEKYNRLIKLLKEVMDGGRILIFMETKKGCDQVTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKFVINYDFPSSLEDYVHRIGRTGRAGAKGTALTFFTHANAKYARELIKILQDAGQVVSPALSVMARSAGSGPLGSGGSFRSRGRGGYGNRGSISGSNAIPVGMKRPWPY* 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2323 609 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 338 346 IPR000629 -
Lja4g2323 609 MobiDBLite consensus disorder prediction 568 592 - -
Lja4g2323 609 Pfam Helicase conserved C-terminal domain 416 526 IPR001650 -
Lja4g2323 609 CDD SF2_C_DEAD 405 535 - -
Lja4g2323 609 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 217 392 IPR014001 -
Lja4g2323 609 CDD DEADc_DDX5_DDX17 198 392 - -
Lja4g2323 609 Gene3D - 159 398 IPR027417 -
Lja4g2323 609 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 258 545 IPR027417 -
Lja4g2323 609 SMART ultradead3 205 408 IPR014001 -
Lja4g2323 609 Pfam DEAD/DEAH box helicase 210 381 IPR011545 GO:0003676|GO:0005524
Lja4g2323 609 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 420 565 IPR001650 -
Lja4g2323 609 Gene3D - 399 567 IPR027417 -
Lja4g2323 609 MobiDBLite consensus disorder prediction 1 132 - -
Lja4g2323 609 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 186 214 IPR014014 GO:0003724
Lja4g2323 609 SMART helicmild6 445 526 IPR001650 -
Lja4g2323 609 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 68 594 - -
Lja4g2323 609 PANTHER LD32873P 68 594 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2323 Lja-Chr4 25723496 25728496 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2323 184 564 Eukaryotic Initiation Factors Gene Family AT3G19760 35.433 6.23e-69 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2323 K12823 - gmx:100817092 860.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2323 4 25723496 25728496 Lja4g2323 4 25723496 25728496 ECH