Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2320 ATGGGTCGCCATTCCTGTTGTGTGAAGCAAAAGTTGAGGAAAGGTTTATGGTCCCCTGAAGAAGATGAGAAGCTCTTCAATCACATAACCAGATTTGGTGTTGGTTGCTGGAGTTCTGTTCCCAAACAAGCTGGACTGCAAAGATGTGGAAAGAGTTGCAGGTTGAGATGGATAAACTACTTGAGGCCTGATTTGAAGAGAGGCATGTTCTCACAGCAAGAGGAGGATCTTATAATCAATCTTCATGAAGTCCTTGGAAACAGGTGGGCTCAGATAGCAGCACAGTTACCAGGGAGAACAGATAATGAGATTAAGAATTTCTGGAATTCATGTTTGAAGAAGAAGCTAATGAAGCAAGGGATTGATCCAACTACACACAAGCCTCTCACTGATGCTCATGTTAAAGAAGAGAGCAAAAGTCCAGACACAACACCTATGCAGATACCAATGTCTCAAGGGACTTTAGCTACCTCAACCTTTGGCTCATCACTTGTAATAAGCGATTCAAATCACTATGATGGTGTTCTAACAGAAGCTTCAAGGGAACTTTTCATGAGCAAGTCAGCATTGGACTCTTTGTCCTACTATGATTTCCAAATTGGTGGTTCTGTGCAGAGTGGTTATAATAACTTACCCTTCACTCATTATCAGAGTTTTGGTCCCAGTTCAAGCCATGGATTCTCTTCAATGCCAAGCCTAACCCAGTCAGATCACGGGAACATGTCGTCCGTGGTGACCGAGTTTTCTAACAACAATTCAGCTTCCAAAATCAGTTCCTTGTTCATGAATGATCAGGTGAAAGAAAGTTCCAGCATTAGCTCAAACATGAGCACTATTTATCCAGGAGGGTCTCACTCTCAAATGAGGAGCTTAATGGAAAATGCAGGATTCTCTTGGGACAATGGAGACAACAAATTGGACCCTTTGTTTCAGTTCCAAGTCAATGGCATAAAATCTGAGGATTTCAGGACAAGTTCATGGGAAGAAGGGCAGCTGCAGAATCAAAACTCAATAGACTTCACTAGCTGTCCATTAACATCACTGTCAGAGGATCTAACAGAAGCAAATTTTGATGTGTTTCAGCATATATGA 1092 0.4194 MGRHSCCVKQKLRKGLWSPEEDEKLFNHITRFGVGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIINLHEVLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLMKQGIDPTTHKPLTDAHVKEESKSPDTTPMQIPMSQGTLATSTFGSSLVISDSNHYDGVLTEASRELFMSKSALDSLSYYDFQIGGSVQSGYNNLPFTHYQSFGPSSSHGFSSMPSLTQSDHGNMSSVVTEFSNNNSASKISSLFMNDQVKESSSISSNMSTIYPGGSHSQMRSLMENAGFSWDNGDNKLDPLFQFQVNGIKSEDFRTSSWEEGQLQNQNSIDFTSCPLTSLSEDLTEANFDVFQHI* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2320 363 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja4g2320 363 CDD SANT 70 109 IPR001005 -
Lja4g2320 363 CDD SANT 17 61 IPR001005 -
Lja4g2320 363 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Lja4g2320 363 SMART sant 66 114 IPR001005 -
Lja4g2320 363 SMART sant 13 63 IPR001005 -
Lja4g2320 363 Gene3D - 11 67 - -
Lja4g2320 363 PANTHER MYB DOMAIN PROTEIN 55 1 359 - -
Lja4g2320 363 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lja4g2320 363 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lja4g2320 363 PANTHER MYB TRANSCRIPTION FACTOR 1 359 - -
Lja4g2320 363 Gene3D - 69 143 - -
Lja4g2320 363 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lja4g2320 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lja4g2320 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2320 Lja-Chr4 25701976 25703339 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2320 1 161 MYB Transcription Factor Family AT4G01680 73.913 5.25e-82 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja4g2320 Myb_DNA-binding 8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2320 K09422 - gmx:100811140 565.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2320 4 25701976 25703339 Lja4g2320 4 25701976 25703339 ECH
Lja4g2320 4 25701976 25703339 Lja4g0392 4 3139862 3142100 PCT