Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2316 ATGTCATCATCCAGCTCTTACAACACTCCTTGTGCGGCCTGCAAGTTCTTGAGGAGGAAATGCATGCCCGGATGCATCTTCGCTCCATACTTCCCACCCGAAGAGCCTCAAAAATTCGCCAACGTCCACAAGATTTTCGGTGCCAGCAATGTGACAAAGCTCCTCAATGAACTCCTCCCTCACCAGAGGGAGGATGCAGTGAACTCCCTTGCCTATGAAGCCGAAGCGCGAGTGAGGGACCCAGTTTATGGCTGTGTAGGAGCCATCTCTTTCCTCCAGAGACAAGTTCAGAGGCTCCAGAAGGAGCTTGATGCTGCTAATGCTGATCTGCTACGTTTTTCCTTACCTGATGTCATTCCTCCAGCTGCATCACTTTCTGTGCCTCCACCAATGAGTTCGGTTCAGTTTGGTGCAAGAATTGGTAATGAGGGAAGTGGGTTTTATCGGCAAGCTCCTTCTACTTATTCTTTCCCTTATTCTCTTCCATGGAATGATACCTCCTCAGAGGATATTAGTGATGGAGGAGGAGGAGGTGGAAATAATTTGTGA 549 0.4882 MSSSSSYNTPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLLRFSLPDVIPPAASLSVPPPMSSVQFGARIGNEGSGFYRQAPSTYSFPYSLPWNDTSSEDISDGGGGGGNNL* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2316 182 Coils Coil 89 109 - -
Lja4g2316 182 PANTHER ELONGATED PETIOLULE 1 1 178 - -
Lja4g2316 182 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Lja4g2316 182 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Lja4g2316 182 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2316 Lja-Chr4 25606854 25608562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2316 2 115 AS2 family AT5G63090 92.105 1.27e-75 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lja4g2316 LOB 2.7e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2316 - - gmx:100803667 293.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5697 1 100728259 100731415 Lja4g2316 4 25606854 25608562 ECH
Lja4g2316 4 25606854 25608562 Lja4g2316 4 25606854 25608562 ECH
Lja4g2316 4 25606854 25608562 Lja1g5697 1 100728259 100731415 PCT