Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2307 ATGCCTGTAAATCCATGGACCCTCTTCTTCTTATGCATTTCCCTTTTACTTCCATACCAATTTTTTATAGCTCTTGCAGTAAACCAACAAGGGGAAGCTCTTCTTTCATGGAAGAGAACCCTGAATGGATCCATTGAGGTGCTGAGTAACTGGGATCCAATTGAAGACACACCATGTAGCTGGTTTGGAATCGGCTGCAATTTGAAGAATGAAGTAGTACAATTAGATCTGAGGTACGTGGATTTGCTAGGAACACTTCCCACCAATTTCACCTCATTGATTTCCTTGAACACACTCATCTTAACCGGAACCAACCTCACTGGTCCAATCCCAAAGGAAATTGGCAAGCTTGGTGAACTCAGCTACTTGGACTTGAGTGACAATGCATTGAGTGGTGAAATCCCAAGTGAGCTCTGCTACTTGCCTGAGCTCAAGGAGCTTCATCTCAACTCCAACGAGCTCACCGGTTCAATTCCGGTCGCAATTGGGAACCTCACAAAGTTGGAGCAGCTTATCCTATATGACAATCAACTGAGTGGTGAAGTTCCTAGCACTATAGGCAACTTGGGAAACTTGCAGGTGATAAGAGCTGGAGGAAACAAGAACCTTGAAGGCCCTTTACCCCAGGAAATTGGAAACTGTTCCAATTTGGTCATGCTGGGGCTTGCTGAAACTAGAATCTCAGGTTTCATGCCACCATCTCTTGGCCTTCTCAAGAACCTTGAAACCATTGCCATGTACACTTCCCTCATCTCTGGCCAAATCCCACCTGAACTTGGTGACTGTAACAAACTCCAAAACATCTACCTCTACGAAAACTCCCTCACAGGATCCATTCCAAGCAAATTGGGCAACCTTAAGAACCTCAAAAGCCTTCTTCTCTGGCAGAACAATTTAGTTGGCACCATCCCTCCAGAGATTGGAAACTGCTACCAGTTATCAGTGATTGATGTGTCAATGAACTCAATAACTGGAAGCATTCCCAGAAGCTTTGGCAACTTGACTTCACTGCAGGAACTTCAGCTCAGTGTGAACCAGATTTCAGGTGAGATTCCTGCAGAACTGGGAAACTGTCAGCAACTCACACACGTGGAGCTTGACAACAATCAAATCACTGGCACCATACCCTCTGAATTGGGAAACCTTGGGAATTTGACTTTGTTGTTCCTGTGGCATAACAAGCTTCAAGGTAACATACCCTCTTCGCTTTCCAATTGTCAAAACCTTGATGCCATTGATCTGTCACAGAATGGGTTAACGGGTCCCATTCCAAAGGGGATATTCCAACTCAAGAATCTCAACAAGCTTCTGCTTCTCTCCAACAATCTTTCCGGGAAAATTCCCAATGAGATTGGGAATTGTTCCTCTCTGATTCGCTTCCGCGCGAATCAAAACAACATCACCGGCACCATCCCCTCCCAGATTGGAAACCTCAAGAACCTGAACTTTTTAGACCTCGGAAGCAATCGGATTTCCGGGGAAATTCCGCAGGAAATCTCCGGCTGCCGGAATCTCACCTTTCTGGATTTGCATGCCAACTCCATCGCCGGAACCTTGCCGGAGAGTCTCAGCAAGCTCATCTCGCTTCAATTCCTCGATTTCTCCGACAACATGATCGAAGGCACGCTCAACCCTACCCTCGGCTCGCTATTCGCTCTCACCAAATTGATTCTCCGGAAGAATCGAATCTCCGGTTCAATCCCTAGTGGAATCAGTTCATGCACCAAGCTGCAGTTGCTAGACCTCAGCAGCAACCGTTTCTCCGGCGAGATCCCCGGCAGCATCGGCAACATTCCAGGGCTGGAAATCGCTCTGAACCTAAGCTGGAACCAGCTCTTCGGCGAGATCCCTCGGGAGTTCTCAGGTTTAACGAAGCTAGGAGTGTTGGATATTTCTCACAACAACCTCGCCGGAAACCTCCAGTACCTCGCCGGCTTACAAAATCTCGTCGCCCTCAACGTCTCGGACAACAAACTCTCCGGCAAGGTTCCGGACACGCCGTTCTTCGCGAAGCTCCCCCTGAACGTGCTCACCGGGAACCCCTCGCTCTGCTTCTCCGGCAACCCGTGCTCCGGCGAAGACACCGGGAGGCCGAATCAGCGGGGGAAAGAGGCGCGCGTGGCGATGATTGTCCTCCTCTGCGTCGCGGTTGTCCTCCTCATGGCGGCGTTATACGTCGTCGTTTCAGCAAAACGACGAGGGGACCGCGAAAACGACGCGGAAGATAGCGACGCGGACATGGCCCCACCGTGGGAAGTGACGCTGTACCAGAAGCTCGACCTGTCAATCTCTGACGTGGCGAAATCCCTCACCGCCGGCAACGTCATCGGCCACGGCCGAAGCGGCGTCGTTTACGGCGTGGACATCCCCGCCGCCGCAACGGGGCTAACCATTGCAGTAAAAAAGTTCCGGTCGTCGGAGAAATTCTCCGCGGCGGCGTTTTCGTCGGAGATTGCCACGCTGGCGAGGATCCGCCACCGGAATATTGTGCGGTTATTGGGCTGGGCCGCGAACCGGAGAACAAAGTTACTGTTTTACGATTATTTACCGAACGGTAATTTGGACACGATGTTACACGAGGGGTGCGCAGGTTTAGTGGAATGGGAGACGCGGCTCAAGATAGCTATTGGTGTGGCTGAAGGACTTGCTTACCTTCATCACGATTGTGTGCCTGCTATCTTGCACCGGGATGTAAAAGCGCAGAACATTTTGTTAGGAGAAAGATATGAAGCTTGTTTGGCTGATTTTGGATTCGCTCGCTTTGTTGAAGAACAGCATTCTTCGTTTTCCCTTAATCCACAGTTTGCTGGTTCTTATGGTTACATTGCTCCTGAATATGCTTGCATGCTTAGAATCACAGAGAAGAGCGATGTGTACAGCTTTGGGGTGGTCCTACTAGAGATAATAACAGGGAAAAAGCCAGTGGATCCATCATTCCCGGATGGACAGCATGTTATTCAATATGTTAGGGAGCACTTGAAGAGCAAGAAGGACCCAATTGAGGTTCTGGATTCCAAGCTTCAAGGCCATCCAGACACACAAATACAAGAGATGCTACAAGCACTTGGTATCTCTCTCTTGTGTACCAGTAACCGTGCAGAGGATCGACCCACGATGAAAGACGTAGCAGCATTATTGAGGGAAATTAGACATGATGTTCCAGCAGGGTCTGAGCCCCACAAGCCCAAGAGATCCGAAGCTTCGTCCTATTCCTCGTCATCGGTGACCCCGGCGCAGTTATTGTTCCTCCAATCTAGTTCTCATTCCTCATCACTTGCTTATTCCTCTTCCTCAGCAACCGCAGCAGTAGCTGGGTACCACTCACCAAGGAACCAATCCTGA 3342 0.4964 MPVNPWTLFFLCISLLLPYQFFIALAVNQQGEALLSWKRTLNGSIEVLSNWDPIEDTPCSWFGIGCNLKNEVVQLDLRYVDLLGTLPTNFTSLISLNTLILTGTNLTGPIPKEIGKLGELSYLDLSDNALSGEIPSELCYLPELKELHLNSNELTGSIPVAIGNLTKLEQLILYDNQLSGEVPSTIGNLGNLQVIRAGGNKNLEGPLPQEIGNCSNLVMLGLAETRISGFMPPSLGLLKNLETIAMYTSLISGQIPPELGDCNKLQNIYLYENSLTGSIPSKLGNLKNLKSLLLWQNNLVGTIPPEIGNCYQLSVIDVSMNSITGSIPRSFGNLTSLQELQLSVNQISGEIPAELGNCQQLTHVELDNNQITGTIPSELGNLGNLTLLFLWHNKLQGNIPSSLSNCQNLDAIDLSQNGLTGPIPKGIFQLKNLNKLLLLSNNLSGKIPNEIGNCSSLIRFRANQNNITGTIPSQIGNLKNLNFLDLGSNRISGEIPQEISGCRNLTFLDLHANSIAGTLPESLSKLISLQFLDFSDNMIEGTLNPTLGSLFALTKLILRKNRISGSIPSGISSCTKLQLLDLSSNRFSGEIPGSIGNIPGLEIALNLSWNQLFGEIPREFSGLTKLGVLDISHNNLAGNLQYLAGLQNLVALNVSDNKLSGKVPDTPFFAKLPLNVLTGNPSLCFSGNPCSGEDTGRPNQRGKEARVAMIVLLCVAVVLLMAALYVVVSAKRRGDRENDAEDSDADMAPPWEVTLYQKLDLSISDVAKSLTAGNVIGHGRSGVVYGVDIPAAATGLTIAVKKFRSSEKFSAAAFSSEIATLARIRHRNIVRLLGWAANRRTKLLFYDYLPNGNLDTMLHEGCAGLVEWETRLKIAIGVAEGLAYLHHDCVPAILHRDVKAQNILLGERYEACLADFGFARFVEEQHSSFSLNPQFAGSYGYIAPEYACMLRITEKSDVYSFGVVLLEIITGKKPVDPSFPDGQHVIQYVREHLKSKKDPIEVLDSKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRHDVPAGSEPHKPKRSEASSYSSSSVTPAQLLFLQSSSHSSSLAYSSSSATAAVAGYHSPRNQS* 1114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2307 1113 SMART serkin_6 770 1046 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2307 1113 MobiDBLite consensus disorder prediction 1051 1065 - -
Lja4g2307 1113 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 6 1067 - -
Lja4g2307 1113 MobiDBLite consensus disorder prediction 1051 1072 - -
Lja4g2307 1113 ProSiteProfiles Protein kinase domain profile. 770 1054 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2307 1113 Gene3D Ribonuclease Inhibitor 141 214 IPR032675 -
Lja4g2307 1113 Gene3D Ribonuclease Inhibitor 29 140 IPR032675 -
Lja4g2307 1113 PRINTS Leucine-rich repeat signature 623 636 - -
Lja4g2307 1113 PRINTS Leucine-rich repeat signature 120 133 - -
Lja4g2307 1113 SMART LRR_typ_2 550 574 IPR003591 -
Lja4g2307 1113 SMART LRR_typ_2 286 310 IPR003591 -
Lja4g2307 1113 SMART LRR_typ_2 165 189 IPR003591 -
Lja4g2307 1113 SMART LRR_typ_2 334 358 IPR003591 -
Lja4g2307 1113 SMART LRR_typ_2 382 406 IPR003591 -
Lja4g2307 1113 SMART LRR_typ_2 478 502 IPR003591 -
Lja4g2307 1113 SMART LRR_typ_2 117 139 IPR003591 -
Lja4g2307 1113 SMART LRR_typ_2 141 164 IPR003591 -
Lja4g2307 1113 SMART LRR_typ_2 646 679 IPR003591 -
Lja4g2307 1113 Pfam Protein tyrosine and serine/threonine kinase 771 1044 IPR001245 GO:0004672|GO:0006468
Lja4g2307 1113 Gene3D Ribonuclease Inhibitor 218 326 IPR032675 -
Lja4g2307 1113 Gene3D Ribonuclease Inhibitor 327 425 IPR032675 -
Lja4g2307 1113 Gene3D Transferase(Phosphotransferase) domain 1 849 1067 - -
Lja4g2307 1113 PANTHER OS01G0170300 PROTEIN 6 1067 - -
Lja4g2307 1113 SUPERFAMILY L domain-like 69 420 - -
Lja4g2307 1113 ProSitePatterns Serine/Threonine protein kinases active-site signature. 893 905 IPR008271 GO:0004672|GO:0006468
Lja4g2307 1113 SUPERFAMILY L domain-like 375 690 - -
Lja4g2307 1113 Pfam Leucine rich repeat 553 612 IPR001611 GO:0005515
Lja4g2307 1113 Pfam Leucine rich repeat 288 347 IPR001611 GO:0005515
Lja4g2307 1113 Pfam Leucine rich repeat 464 515 IPR001611 GO:0005515
Lja4g2307 1113 SUPERFAMILY Protein kinase-like (PK-like) 758 1047 IPR011009 -
Lja4g2307 1113 Gene3D Ribonuclease Inhibitor 426 696 IPR032675 -
Lja4g2307 1113 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Lja4g2307 1113 Gene3D Phosphorylase Kinase; domain 1 744 848 - -
Lja4g2307 1113 SMART LRR_sd22_2 382 411 - -
Lja4g2307 1113 SMART LRR_sd22_2 262 288 - -
Lja4g2307 1113 SMART LRR_sd22_2 623 648 - -
Lja4g2307 1113 SMART LRR_sd22_2 502 525 - -
Lja4g2307 1113 SMART LRR_sd22_2 478 501 - -
Lja4g2307 1113 SMART LRR_sd22_2 574 600 - -
Lja4g2307 1113 SMART LRR_sd22_2 117 143 - -
Lja4g2307 1113 SMART LRR_sd22_2 165 191 - -
Lja4g2307 1113 ProSitePatterns Protein kinases ATP-binding region signature. 776 802 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2307 Lja-Chr4 25464185 25469189 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2307 24 1099 Receptor kinase-like Gene Family AT5G56040 55.064 0.0 1140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lja4g2307 Pkinase 9.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2307 - - lja:Lj4g3v1463050.1 1758.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2307 4 25464185 25469189 Lja4g2307 4 25464185 25469189 ECH