Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2290 ATGCAGAGCGCGGTGGTTTTACCTCTCTCCCATTCCCTCTCCGTCCACAAAACTCGAACCCGCTTCCTCACTTCCCATTTTCCCATTCCTTCTTCCATTCCCAACCTCAATGCATCTTCCTCCTCCTCTTCCTTTCCGCGTTTCGCTTCTTCCAAATGGACAGCGACACCCTCCGCCTCCACCTTCCGAATCAACGCAACCGCCAGCACCACCACCGTCTCCTCCTCCGATAGCAGCGGAAGCGGTAGTTTGTTTAAAACTCTGGAGCTGGGAGCCTTGTTTAGCCTATGGATCATCTTCAACATCTATTTCAACATTTACAACAAACAGGTTTTAGAAGTTTACCATTTCCCTGCAACTCTAACTGCCATTCAATTCGCTGTGGGGACTCTCATTGTTTTGTTCATGTGGATTTTCAATCTCTACAAGAGGCCCAAAATTAGTGCAGCCCAGCTTGCGGCAATAGTTCCGCTGGCTCTGGTTCATACTTTGGGGAACCTTTTCACTAACATGAGTCTCGGAAAAGTCGCCGTGTCTTTCACTCACACCATTAAAGCTATGGAGCCTTTCTTTTCAGTCATCCTCTCTGCTATGTTCCTTGGAGAGATGCCTACAGCATGGGTGGTTGCTTCCCTTGTGCCTGTTGTTGGTGGGGTGGGGCTGGCGTCTTTTACAGAGGCCTCCTTCAATTGGGCTGGGTTTTGGAGTGCAATGGCTTCCAATTTGTCAAATCAATCTCGTAATGTTCTTAGCAAAAAGCTCATGGTCAAGAAGGAGGAACAGGAACCCATAGACAACATAACCCTCTTCTCAATAATTACAGTTTTGTCATTCTTGTTATCAGCACCTGTAACCATCTTCATGGAGGGTGTCAAATTTACCCCTGCTTACCTTCAATCCGCGGGATTAAATGTTCAACAAGTGTACACCAGAATTCTTATTGCTGCACTATGTTTCCATGTATATCAGCAAGTTGCTTATATGATACTGCAGAGAGTATCACCTGTCACCCACTCTGTGGCAAACTGTATGAAGCGTGTGGTGGTCATCGTCAGCGCTGTCATCTTCTTCCAAACACCTGTCTCACCAATTAACGCATTTGGGACTGCTATAGCTCTTGCTGGTGTTTTCCTCTATTCCAGGGTGAAGCAAATTAAGCCCAAGACGGCTTGA 1173 0.468 MQSAVVLPLSHSLSVHKTRTRFLTSHFPIPSSIPNLNASSSSSSFPRFASSKWTATPSASTFRINATASTTTVSSSDSSGSGSLFKTLELGALFSLWIIFNIYFNIYNKQVLEVYHFPATLTAIQFAVGTLIVLFMWIFNLYKRPKISAAQLAAIVPLALVHTLGNLFTNMSLGKVAVSFTHTIKAMEPFFSVILSAMFLGEMPTAWVVASLVPVVGGVGLASFTEASFNWAGFWSAMASNLSNQSRNVLSKKLMVKKEEQEPIDNITLFSIITVLSFLLSAPVTIFMEGVKFTPAYLQSAGLNVQQVYTRILIAALCFHVYQQVAYMILQRVSPVTHSVANCMKRVVVIVSAVIFFQTPVSPINAFGTAIALAGVFLYSRVKQIKPKTA* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2290 390 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 88 388 IPR004696 GO:0016021|GO:0022857|GO:0055085
Lja4g2290 390 PANTHER SOLUTE CARRIER FAMILY 35 6 386 - -
Lja4g2290 390 PANTHER PLASTID PHOSPHATE TRANSLOCATOR 6 386 - -
Lja4g2290 390 SUPERFAMILY Multidrug resistance efflux transporter EmrE 133 225 - -
Lja4g2290 390 Pfam Triose-phosphate Transporter family 89 380 IPR004853 -
Lja4g2290 390 SUPERFAMILY Multidrug resistance efflux transporter EmrE 304 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2290 Lja-Chr4 25278084 25281707 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2290 1 388 Antiporters AT5G33320 65.111 3.44e-176 495
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2290 K15283 - gmx:100780925 504.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5670 1 100121330 100125643 Lja4g2290 4 25278084 25281707 ECH
Lja4g2290 4 25278084 25281707 Lja4g2290 4 25278084 25281707 ECH
Lja4g2290 4 25278084 25281707 Lja1g5670 1 100121330 100125643 PCT