Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2288 ATGCATTTGCAAGAAAACTATTTGAAACCCGGCATGAAAGATGAGCTTCCTTTTGGGGTTCCTTCCTTGCAAGATTTTCACCATATTGATCAGTTTCATCATGAGAATGGCTCCTCCAATCCAATTTTTGGGATCCAGACTCCAAATTTTGGTCCTTTTGATTTTCAAGTTTATGAGGGCAAGCCTTTTGCTGAGCAAAATGGTTGTGGGCATGCTCACCATATGGAGAATATCCCATACCAAGGTTATAGTATGAACCTCCATCAGGGGAATCAACAGGATATGAATATGCTGGTTGCAAACCAAAGTTATTACATGCCCTTTAACACTCTAGAAACCAAGCCTTTGAATTTTGTTGCACCAGATGAAATGTCCTGCATATCCCAAACAGATTATCACAGGAGAATTGGCTTGAATAAAAACATGGAATCTCAAACCACTAGAAGAACCTTTAAATCTCAGAAGAAGTCCAACATAGTGAAGGGGCAATGGACTGTGGATGAAGATAGATTGTTGATGCAACTGGTTGAACAATATGGAGTGAGGAAGTGGTCTCACATTGCTCAGAAGTTGCCTGGAAGAATTGGGAAACAGTGCAGAGAACGATGGCATAACCATTTAAGGCCTGACATTAAGAAGGATATATGGACTGATGAAGAGGACAAGATACTGATCCAAGCTCATGCAGAGATAGGAAATAAGTGGGCAGAAATGGTGAAAAAATTGCCAGGAAGAACGGAGAACTCAATTAAAAACCATTGGAATGCAACAAAGAGAAGGCAATATTCCAAAAGAAAATGCCGCTCAAAGTACCCAAGAGGCTCTCTTCTGCAGGAATATATCAAGAGCTTGAACTTGGACCAAAACCCACCAAGAGATTTTCGAAAAAGATCTCATGCTAATGCTAAGACAAACATTTCTAACACCAGCAAATTAGCACCAACTCAGCCTCAGATTGTAGGTCAGTTAACTTGTTCCACTGAACCCTTGGTGCCAAACTATGACTTCAATGAGGTCCAAGATTTTTCCCTAGATGATAACTTGTTTGAAGAGAGTGGTATTATTGACTCTCTGCTAGATGATATGCACAATATTCCAAGCATGGATGAGAAATTTTTTGATGGAAAATTGCAATGTGCTCCTACACAATCTTGTAAGGGCAAGCAAGTTGTTAATCTTGATGAGTATCACTTTGAGACAGAGATGTCAGAGGAGATGATGACATCCACTTCAGGGATTGAAGTTAAGAAGGAGTTGGATTTGGTGGAGATGATGTCTCTGGTTCATGAAAGTATTTAA 1299 0.3988 MHLQENYLKPGMKDELPFGVPSLQDFHHIDQFHHENGSSNPIFGIQTPNFGPFDFQVYEGKPFAEQNGCGHAHHMENIPYQGYSMNLHQGNQQDMNMLVANQSYYMPFNTLETKPLNFVAPDEMSCISQTDYHRRIGLNKNMESQTTRRTFKSQKKSNIVKGQWTVDEDRLLMQLVEQYGVRKWSHIAQKLPGRIGKQCRERWHNHLRPDIKKDIWTDEEDKILIQAHAEIGNKWAEMVKKLPGRTENSIKNHWNATKRRQYSKRKCRSKYPRGSLLQEYIKSLNLDQNPPRDFRKRSHANAKTNISNTSKLAPTQPQIVGQLTCSTEPLVPNYDFNEVQDFSLDDNLFEESGIIDSLLDDMHNIPSMDEKFFDGKLQCAPTQSCKGKQVVNLDEYHFETEMSEEMMTSTSGIEVKKELDLVEMMSLVHESI* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2288 432 Gene3D - 215 276 - -
Lja4g2288 432 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 156 211 IPR017930 -
Lja4g2288 432 PANTHER MYB PROTEIN-RELATED 93 287 - -
Lja4g2288 432 CDD SANT 216 258 IPR001005 -
Lja4g2288 432 Gene3D - 160 213 - -
Lja4g2288 432 Pfam Myb-like DNA-binding domain 216 255 IPR001005 -
Lja4g2288 432 Pfam Myb-like DNA-binding domain 161 207 IPR001005 -
Lja4g2288 432 SUPERFAMILY Homeodomain-like 158 254 IPR009057 -
Lja4g2288 432 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 212 262 IPR017930 -
Lja4g2288 432 CDD SANT 164 207 IPR001005 -
Lja4g2288 432 ProSiteProfiles Myb-like domain profile. 156 207 IPR001005 -
Lja4g2288 432 PANTHER BNAC07G50190D PROTEIN 93 287 - -
Lja4g2288 432 ProSiteProfiles Myb-like domain profile. 208 258 IPR001005 -
Lja4g2288 432 SMART sant 160 209 IPR001005 -
Lja4g2288 432 SMART sant 212 260 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2288 Lja-Chr4 25251764 25253798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2288 55 362 MYB Transcription Factor Family AT4G18770 50.621 7.30e-95 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja4g2288 Myb_DNA-binding 1.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2288 K09422 - gmx:100816653 589.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5669 1 100074377 100076314 Lja4g2288 4 25251764 25253798 ECH
Lja4g2288 4 25251764 25253798 Lja4g2288 4 25251764 25253798 ECH
Lja1g5669 1 100074377 100076314 Lja4g2288 4 25251764 25253798 PCT