Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2269 ATGACACAGAAAGCATGGAGAAAGTTCTTGACATATGTTGGACCTGGTTTCCTAGTCTCCTTAGCTTACCTTGACCCTGGAAACATGGAAACTGATCTGCAAGCTGGAGCTAGCCACAGATATGAGCTGTTGTGGTTGGTACTGGTTGGACTGATATTTGCACTTATAATTCAGTCATTGGCTGCGAACCTCGGCGTGATCACCGGGAAACACCTTTCAGAAGTATGCAAAATTGAGTACCCATTATCTGTGAAGTACTGCTTGTGGTTATTAGCTGAGGTTGCTGTCATAGCTTCAGACATACCTGAAGTGATTGGCACAGCCTTTTCTCTTAACATACTCTTCCACATCCCTTTATGGGTAGGAGTTCTGATGAGTGGCTGCAGCACTCTCTTGCTTCTGAGTCTGCAGAGATTTGGGGTGAGGAAGTTGGAACTACTGATAACAATCCTAGTTTTCATAATGGCTGCGTGTTTCTTCGCGGAAATGAGCTTTGTAAATGTCCCGACTTCGGAAGTACTAAAGGGAATGTTTGTCCCCAAACTCGATGGCGTTGGAGCCGTAGGAGATGCAATTGCCCTTCTCGGCGCCCTCATCATGCCGCACAATCTTTTCCTCCACTCTGCTCTGGTTCTGTCTAGAAAAGTTCCCATTTCTGTTCGAAGCATCAATGATGCATCAAGGTACTTTCTTATAGAAAGCGGGTTAGCATTGTTTGTAGCATTTCTGATCAATGTTGCAATGGTTTCTGTTACGGGAACTGTTTGTTTTTCCAAAAACCTTTCTGCAGAAGATACAGATCTCTGCAATGATCTCAACCTTAACTCTGCTTCTTTCCTTCTCAAGAATACCTTGGGACGGTCAAGCTCAACCGTTTATGCGATAGCACTTCTTGCTTCAGGACAAAGCTCTACTATAACTGGAACCTATGCAGGACAGTACATTATGCAGGGTTTCTTGGAGATAAAGATGAAAAGATGGAAAAGGAACTTGATGACTAGGTGCATTTCCATAGCACCTAGTCTTATTGTTTCCATCATTGGTGGTTCTTCTGGGTCTGGTCGCCTTATTATCATTGCATCAATGATACTTTCTTTTGAGCTTCCATTTGCTTTAATTCCACTTCTCAAGTTTAGCTGCAGCAGTACCAAGATGGGACCTCACAAGAGTTCTTTGATTATCATTATCATCTCATGGATACTAGGCTTAGGCATCATTGGTGCCAATGTGTACTTCCTCAGCACTTCCTTTGTGAAGTGGCTAATTCATAGCAGTCTTCCAAAGGTGGCAAATGTGTTCATTGGGACTATAGTGTTTCCTCTGATGGCAGTTTATATCATCTCAACTATCTACCTAACATTTAGAAAAGACACTGTTAAGATATATACTGAGACAAAGAATATTGATACAGTGCAAAGACATGTAGAAAAGGGGACTTTGGATAATGATCAATTAGAGTTGAGAAATGCTCCTTATAGAGAAGACTTAGCAAGTATCCCACTACCAGAATAA 1512 0.4206 MTQKAWRKFLTYVGPGFLVSLAYLDPGNMETDLQAGASHRYELLWLVLVGLIFALIIQSLAANLGVITGKHLSEVCKIEYPLSVKYCLWLLAEVAVIASDIPEVIGTAFSLNILFHIPLWVGVLMSGCSTLLLLSLQRFGVRKLELLITILVFIMAACFFAEMSFVNVPTSEVLKGMFVPKLDGVGAVGDAIALLGALIMPHNLFLHSALVLSRKVPISVRSINDASRYFLIESGLALFVAFLINVAMVSVTGTVCFSKNLSAEDTDLCNDLNLNSASFLLKNTLGRSSSTVYAIALLASGQSSTITGTYAGQYIMQGFLEIKMKRWKRNLMTRCISIAPSLIVSIIGGSSGSGRLIIIASMILSFELPFALIPLLKFSCSSTKMGPHKSSLIIIIISWILGLGIIGANVYFLSTSFVKWLIHSSLPKVANVFIGTIVFPLMAVYIISTIYLTFRKDTVKIYTETKNIDTVQRHVEKGTLDNDQLELRNAPYREDLASIPLPE* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2269 503 PRINTS Natural resistance-associated macrophage protein signature 88 114 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lja4g2269 503 PRINTS Natural resistance-associated macrophage protein signature 361 380 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lja4g2269 503 PRINTS Natural resistance-associated macrophage protein signature 191 214 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lja4g2269 503 PRINTS Natural resistance-associated macrophage protein signature 301 320 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lja4g2269 503 PRINTS Natural resistance-associated macrophage protein signature 329 346 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lja4g2269 503 PRINTS Natural resistance-associated macrophage protein signature 116 135 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lja4g2269 503 PRINTS Natural resistance-associated macrophage protein signature 141 162 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lja4g2269 503 PANTHER METAL TRANSPORTER NRAMP5 3 503 - -
Lja4g2269 503 Pfam Natural resistance-associated macrophage protein 30 391 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lja4g2269 503 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 3 503 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lja4g2269 503 Hamap Divalent metal cation transporter MntH [mntH]. 1 417 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lja4g2269 503 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 7 383 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2269 Lja-Chr4 24962344 24968020 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2269 3 503 Inorganic Solute Cotransporters AT1G15960 58.683 0.0 598
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2269 K21398 - gmx:100787785 793.112