Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2265 ATGAAGAAGAACTATTACTGGTTTAAAGAAATTTCTCACAATGTGAGGTCAGGGAGAAGGCTCTCTCTAGGGGAGTACAAACAAGCAGTGTCATGGTCTAAGTATCTGGTGTCCTCAGGGGCAGCTATAAAGGGAGAAGGAGAAGAGGATTGGAGTGCAGATTTGTCTCAGTTGTTTATTGGGTCCAAATTTGCTTCTGGAAGACATAGCAGGGTCTACAGAGGAATCTACAAGCACATGGATGTGGCGATTAAGCTTGCAAGTCAACCAGAGGAGGATGAGGAGTTGGCTGTTTTGCTTGACAAGCAGTTTACTTCAGAGGTTGCTTTGCTGTTTCGGTTGCATCATCCAAATATCATAACTTTTGTTGCAGCTTGCAAAAAACCTCCTGTGTTCTGCATAATCACTGAATACATGGCTGGGGGCTCATTGGGAAAATACCTGCATCAGCAAGAACCACATTCAGTTCCTCACAAACTAGTTCTGAAATTAGCCTTAGACATTGCAAGGGGAATGCAATTTCTTCATTCTCAAGGCATACTTCACAGGGACCTCAAATCAGAAAATCTGCTGTTGGGTGAGGATATGTGTGTGAAAGTGGCAGATTTTGGGATCTCTTGCTTAGAATCCCAATGTGGCAGTGTTAAAGGATTCACAGGGACTTACCGTTGGATGGCACCTGAAATGATCAAAGAAAAGCATCACACCAAGAAAGTAGATGTCTATAGTTTCGCCATAGTTCTATGGGAGCTTTTAACTGGATTGACACCATTTGACAACATGACACCAGAACAAGCAGCATATGCAGTCACCCACAAGAATGCAAGGCCTCAGTTACCATCTGACTGTCCACTGGCATTTAGTCATCTCATCAACAGATGTTGGTCAAGCAATCCAAATAAAAGGCCACATTTTGATGAGATAGTTTCAATTTTGGAGAACTATACAGAATCACTTGAGCAGGATCCAGAATTTTTCTCCACTTATAAACCACGTCAAAGTAATCTAATTCTGAGATGCTTACCAAAATGTGGTGATGTTGGCCATAACTCTGCTTCCACTGCTTAG 1068 0.4232 MKKNYYWFKEISHNVRSGRRLSLGEYKQAVSWSKYLVSSGAAIKGEGEEDWSADLSQLFIGSKFASGRHSRVYRGIYKHMDVAIKLASQPEEDEELAVLLDKQFTSEVALLFRLHHPNIITFVAACKKPPVFCIITEYMAGGSLGKYLHQQEPHSVPHKLVLKLALDIARGMQFLHSQGILHRDLKSENLLLGEDMCVKVADFGISCLESQCGSVKGFTGTYRWMAPEMIKEKHHTKKVDVYSFAIVLWELLTGLTPFDNMTPEQAAYAVTHKNARPQLPSDCPLAFSHLINRCWSSNPNKRPHFDEIVSILENYTESLEQDPEFFSTYKPRQSNLILRCLPKCGDVGHNSASTA* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2265 355 PRINTS Tyrosine kinase catalytic domain signature 220 230 IPR001245 GO:0004672|GO:0006468
Lja4g2265 355 PRINTS Tyrosine kinase catalytic domain signature 283 305 IPR001245 GO:0004672|GO:0006468
Lja4g2265 355 PRINTS Tyrosine kinase catalytic domain signature 239 261 IPR001245 GO:0004672|GO:0006468
Lja4g2265 355 PRINTS Tyrosine kinase catalytic domain signature 136 149 IPR001245 GO:0004672|GO:0006468
Lja4g2265 355 PRINTS Tyrosine kinase catalytic domain signature 174 192 IPR001245 GO:0004672|GO:0006468
Lja4g2265 355 Gene3D Transferase(Phosphotransferase) domain 1 141 338 - -
Lja4g2265 355 SUPERFAMILY Protein kinase-like (PK-like) 48 312 IPR011009 -
Lja4g2265 355 SMART serkin_6 58 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2265 355 ProSiteProfiles Protein kinase domain profile. 58 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2265 355 PANTHER SERINE/THREONINE-KINASE HT1-LIKE PROTEIN 3 334 - -
Lja4g2265 355 PANTHER SERINE-THREONINE PROTEIN KINASE 3 334 - -
Lja4g2265 355 Pfam Protein tyrosine and serine/threonine kinase 60 312 IPR001245 GO:0004672|GO:0006468
Lja4g2265 355 Gene3D Phosphorylase Kinase; domain 1 48 140 - -
Lja4g2265 355 CDD STKc_MAP3K-like 65 312 - -
Lja4g2265 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 180 192 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2265 Lja-Chr4 24908766 24912603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2265 31 321 MAP Kinase Kinase Kinase AT1G62400 63.390 6.67e-136 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Lja4g2265 PK_Tyr_Ser-Thr 4.5e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2265 - - gmx:100778530 638.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2265 4 24908766 24912603 Lja4g2265 4 24908766 24912603 ECH
Lja1g5654 1 99376159 99381226 Lja4g2265 4 24908766 24912603 PCT