Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2263 ATGGCTATCAGAGGCGTCGATTTCAAGTGGTACGATGGGTTTTTCTTGTCCATGCTCGCAACCAGTGTAGTTATTGTTGCAATGAATTGGAAGCGTTACCATTCTTGTACATACCCTTTGCACATATGGATTGTGGTGGACTACACTACTGTGTTTGTTTTGAGGCTCTTGATGTTTGTGGATAATGGGCTTGCTGCGGGAATGGGATTAGATTTTGGGTGGCAGCAGAGGTATGCTCGTTTCTGTGGAAGAGTAGTAGTCCTTTCAGTCCTTGCATTGCTTCTCTATCCATTTCTTTGGGCTTGGACTATTATTGGTACCCTGTGGTTTAGCAGTTCCAAGAACTGTTTGCCTGAACAGGGTCAGAAATGGGCCTTCCTCATCTGGTTGCTTTTTAGCTACTGTGGACTCTTTTGCATTGCTTGCATCTCACTTGGGAAGTGGTGGACACGGAGACAAGCACACTTATTGCGGGCCCAACAGGGTATCCCTGTATCTGAATACGGGGTTCTGGTTGATATGATCCGCGTTCCTGATTGGGCATTTGAAGCTGCAGGTCAAGAAACAAGAGTCATGGCCCAAGATGCTGCCACATATCAACCAGGACTTTACTTAACTCCAGCTCAGAGAGAAGCAGTTGAAGCTTTAATTCAGGAACTCCCAAAGTTCAGGTTAAAGGCTGTTCCTACTGATTGCAGTGAATGTCCCGTCTGCTTAGAAGAGTTCCATGAAGGGAATGAGGTCCGTGGCTTGCCTTGCGCTCACAATTTTCATGTTGAATGCATTGATGAGTGGCTTAGGCTGAATGTGAAATGTCCTCGGTGCCGATGCTCGGTGTTTCCAAATCTTGATCTCAGTGCCCTGTCCAACCTCCGTGCTGATTCCGAACGTTCGCCTGCGAGTGTTATGACAACAACCAGATATGTGAGAGGCCAACCTGCTAGTCAAAGTTACCGGTTACGATTACAGGGTCTTCTCCGCCCAGTGCGTGCTGAAGTTGCAGGGCCAGTTGGTGACACCGATGATGCTTTGGATAATGCTGAGAACGGAGCTGTACCTGTCGGGAGTCGAAATGCATCAACTAGAGAGCAGGTCTCTTCTGTTGAATGCATGCCTGTGAGTGTTTCCTCTGCACAAAGTTAA 1143 0.4751 MAIRGVDFKWYDGFFLSMLATSVVIVAMNWKRYHSCTYPLHIWIVVDYTTVFVLRLLMFVDNGLAAGMGLDFGWQQRYARFCGRVVVLSVLALLLYPFLWAWTIIGTLWFSSSKNCLPEQGQKWAFLIWLLFSYCGLFCIACISLGKWWTRRQAHLLRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRVMAQDAATYQPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECPVCLEEFHEGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRADSERSPASVMTTTRYVRGQPASQSYRLRLQGLLRPVRAEVAGPVGDTDDALDNAENGAVPVGSRNASTREQVSSVECMPVSVSSAQS* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2263 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
Lja4g2263 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 363 - -
Lja4g2263 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 363 IPR044793 GO:0004842|GO:0010182
Lja4g2263 380 SUPERFAMILY RING/U-box 217 284 - -
Lja4g2263 380 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Lja4g2263 380 MobiDBLite consensus disorder prediction 336 363 - -
Lja4g2263 380 Pfam Ring finger domain 234 276 IPR001841 -
Lja4g2263 380 CDD RING-H2_RNF111_like 234 278 - -
Lja4g2263 380 SMART ring_2 235 275 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2263 Lja-Chr4 24895555 24899867 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2263 58 353 C3H Transcription Factor Family AT3G47990 74.916 2.73e-159 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2263 K16284 - gmx:100812016 697.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2263 4 24895555 24899867 Lja4g2263 4 24895555 24899867 ECH
Lja4g2263 4 24895555 24899867 Lja1g5650 1 99258404 99264666 PCT