Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2260 ATGAAAAACTCAAACAATACAAGTGATTCACCAAAACTTGATCGCAAAACTATTGAAAAGAACCGCAGAATTCACATGAAAGCCCTATGCTTCAAGCTTATGTCTTCTATTCCTGCTTCCAAGTACCTCAAACCTACTAAGGACATGCTAGCGCAGCAGGACCAATTGGATCTAGCAGCCGGGTATATAAAGCATATGAGAGAAAAAATAGACAAATTGAAGGGGAAGAAGGAGCAAGCCATGAGCATGATGAGTTCAAGTCGAAGCAATGATGGATTTTTCAACATTAGCACAAAATTGCCCCTGCTTGAGATAAGAGACTTGGGTTCAGCCATTGAAGTGATGTTGATAACTGGGTTGAACAAGAACTTCATGCTCTACCAAGTCATTTGTGTACTTGAGGAAGAAGGGGTTGAAGTTGTCACTGCAAACTTCTCTACTATTTCTGACAAGATTTTTTACACCATTCATGCTAAGGTTAAAATATCAAGACTTGGTGTTGAGCCCACCAGGGTATATCAGAGGCTTCAGGAGTTGATTTCACCAATAGAAAGTTAG 558 0.3996 MKNSNNTSDSPKLDRKTIEKNRRIHMKALCFKLMSSIPASKYLKPTKDMLAQQDQLDLAAGYIKHMREKIDKLKGKKEQAMSMMSSSRSNDGFFNISTKLPLLEIRDLGSAIEVMLITGLNKNFMLYQVICVLEEEGVEVVTANFSTISDKIFYTIHAKVKISRLGVEPTRVYQRLQELISPIES* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2260 185 Coils Coil 63 83 - -
Lja4g2260 185 Gene3D - 11 94 IPR036638 GO:0046983
Lja4g2260 185 PANTHER TRANSCRIPTION FACTOR BHLH162 6 181 - -
Lja4g2260 185 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 6 181 IPR015660 GO:0003700|GO:0006357
Lja4g2260 185 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 14 80 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2260 Lja-Chr4 24846285 24848360 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2260 5 183 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 32.804 8.66e-29 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2260 - - vun:114179389 280.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2260 4 24846285 24848360 Lja4g2260 4 24846285 24848360 ECH